miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 100690 0.69 0.929725
Target:  5'- uGAUG-CUgaugCGgaGGCGCCGCCG-CGg -3'
miRNA:   3'- cCUACaGAa---GCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 40386 0.69 0.929725
Target:  5'- cGAUGUCggCGUcgUGGCGCaccuCGCUGUCGa -3'
miRNA:   3'- cCUACAGaaGCG--ACUGUG----GCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 214733 0.67 0.974525
Target:  5'- --cUGUCUggGCUucggucaGCGCCGCCGUCu -3'
miRNA:   3'- ccuACAGAagCGAc------UGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 196141 0.68 0.959526
Target:  5'- ---cGUCcgcUGCUGGCGCUGCCGUUc -3'
miRNA:   3'- ccuaCAGaa-GCGACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 102189 0.68 0.95592
Target:  5'- gGGGUGgcgacUUUCGCcGAC-CCGCUGUCc -3'
miRNA:   3'- -CCUACa----GAAGCGaCUGuGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 74747 0.68 0.95592
Target:  5'- ---gGUCUccCGaCUGGCGUCGCCGUCGa -3'
miRNA:   3'- ccuaCAGAa-GC-GACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 168389 0.69 0.948068
Target:  5'- aGGAUGUa---GgUGGCguuGCCGCCGUUGg -3'
miRNA:   3'- -CCUACAgaagCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 160324 0.69 0.948068
Target:  5'- cGGG-GUCaUCGUUGugGuuGUCGUCGu -3'
miRNA:   3'- -CCUaCAGaAGCGACugUggCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 62546 0.69 0.948068
Target:  5'- ---cGUCUUCGacccGCACCGCaCGUCGc -3'
miRNA:   3'- ccuaCAGAAGCgac-UGUGGCG-GCAGC- -5'
14589 5' -54.2 NC_003521.1 + 122233 0.69 0.943816
Target:  5'- cGGGUGcCggCGaCUGAgCGCCGCCacGUCGc -3'
miRNA:   3'- -CCUACaGaaGC-GACU-GUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 188130 0.69 0.943816
Target:  5'- uGGUGgagCg--GCUGGCACCGCCGaCGc -3'
miRNA:   3'- cCUACa--GaagCGACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 126633 0.69 0.929725
Target:  5'- uGAUGUCgUCGUUGAUGCCcgaGCCGaUCa -3'
miRNA:   3'- cCUACAGaAGCGACUGUGG---CGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 151492 0.72 0.853565
Target:  5'- uGGGUG-CgacaUCGCgGACggugaacuACCGCCGUCGg -3'
miRNA:   3'- -CCUACaGa---AGCGaCUG--------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 23594 0.72 0.845106
Target:  5'- gGGGUGcuggccugcauccUCUUCGCgaucuGCACCGCCGUgGc -3'
miRNA:   3'- -CCUAC-------------AGAAGCGac---UGUGGCGGCAgC- -5'
14589 5' -54.2 NC_003521.1 + 53440 0.73 0.769389
Target:  5'- cGGAggcUGUUgcCGCUGcuCACCGUCGUCGg -3'
miRNA:   3'- -CCU---ACAGaaGCGACu-GUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 29237 0.74 0.732062
Target:  5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3'
miRNA:   3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 39006 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 209817 0.75 0.703183
Target:  5'- ---cGUCcUCGCcGGCGCCGUCGUCGc -3'
miRNA:   3'- ccuaCAGaAGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 165176 0.66 0.989473
Target:  5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3'
miRNA:   3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.