miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 47132 0.66 0.98323
Target:  5'- uGGAgGUCaUCGUagcaauaGACGCCGCCG-CGc -3'
miRNA:   3'- -CCUaCAGaAGCGa------CUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 53440 0.73 0.769389
Target:  5'- cGGAggcUGUUgcCGCUGcuCACCGUCGUCGg -3'
miRNA:   3'- -CCU---ACAGaaGCGACu-GUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 55860 0.66 0.985003
Target:  5'- ---gGUCcaCGCUGgcccGCACCGCCG-CGa -3'
miRNA:   3'- ccuaCAGaaGCGAC----UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 57978 0.69 0.929725
Target:  5'- ---cGUCcUCGCUGcuguugucaGCGCCGCCGaUCGc -3'
miRNA:   3'- ccuaCAGaAGCGAC---------UGUGGCGGC-AGC- -5'
14589 5' -54.2 NC_003521.1 + 62546 0.69 0.948068
Target:  5'- ---cGUCUUCGacccGCACCGCaCGUCGc -3'
miRNA:   3'- ccuaCAGAAGCgac-UGUGGCG-GCAGC- -5'
14589 5' -54.2 NC_003521.1 + 74108 0.68 0.966116
Target:  5'- aGGAUGauagCUg-GCUGugGCCGCUGgUCa -3'
miRNA:   3'- -CCUACa---GAagCGACugUGGCGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 74747 0.68 0.95592
Target:  5'- ---gGUCUccCGaCUGGCGUCGCCGUCGa -3'
miRNA:   3'- ccuaCAGAa-GC-GACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 76417 0.68 0.966116
Target:  5'- cGGcgGUgUgguggUGCUGGCgACCGuuGUCGu -3'
miRNA:   3'- -CCuaCAgAa----GCGACUG-UGGCggCAGC- -5'
14589 5' -54.2 NC_003521.1 + 76982 0.68 0.95592
Target:  5'- aGGAaagccacggCUUCGgacgUGACGCCGCCGUCc -3'
miRNA:   3'- -CCUaca------GAAGCg---ACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 77444 0.66 0.990705
Target:  5'- aGGAUGcCgcCGUuggugcccgUGACACUGCCGcCGc -3'
miRNA:   3'- -CCUACaGaaGCG---------ACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 78567 0.73 0.813404
Target:  5'- cGGUGUCgcaccccCGUUGACGCCcaccccgccagcGCCGUCGg -3'
miRNA:   3'- cCUACAGaa-----GCGACUGUGG------------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 78656 0.66 0.990822
Target:  5'- cGAUGUCgucgggcuucucggCGCagggGAaGCCGCCGUCu -3'
miRNA:   3'- cCUACAGaa------------GCGa---CUgUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 82853 0.66 0.98663
Target:  5'- cGGcgG-CgUCGCUaccaGCGCCGUCGUCGc -3'
miRNA:   3'- -CCuaCaGaAGCGAc---UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 84649 0.68 0.967937
Target:  5'- gGGAUGUCgugggucuccucCGCcucGcCACCGUCGUCGg -3'
miRNA:   3'- -CCUACAGaa----------GCGa--CuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 84725 0.68 0.959526
Target:  5'- aGGAga----CGCgGGCACUGCCGUCGu -3'
miRNA:   3'- -CCUacagaaGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 84767 0.67 0.979214
Target:  5'- cGGcgG-CgacgUUGUUGGCACCGCCGa-- -3'
miRNA:   3'- -CCuaCaGa---AGCGACUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 87861 0.7 0.913617
Target:  5'- aGGUGUCcUCGCaGGCGCUggccagGCCGUUGg -3'
miRNA:   3'- cCUACAGaAGCGaCUGUGG------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 88264 0.67 0.981302
Target:  5'- cGGUGgag-CGCgUGACGCUGCCGUa- -3'
miRNA:   3'- cCUACagaaGCG-ACUGUGGCGGCAgc -5'
14589 5' -54.2 NC_003521.1 + 98135 0.68 0.959526
Target:  5'- cGGA-GUCcgugguaGCUGcUGCCGCCGUCGc -3'
miRNA:   3'- -CCUaCAGaag----CGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 100690 0.69 0.929725
Target:  5'- uGAUG-CUgaugCGgaGGCGCCGCCG-CGg -3'
miRNA:   3'- cCUACaGAa---GCgaCUGUGGCGGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.