miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 193331 0.66 0.989473
Target:  5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3'
miRNA:   3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5'
14589 5' -54.2 NC_003521.1 + 46501 0.66 0.990588
Target:  5'- cGGggGUCUUCuugggguGCUGGCACacgGgCGUCu -3'
miRNA:   3'- -CCuaCAGAAG-------CGACUGUGg--CgGCAGc -5'
14589 5' -54.2 NC_003521.1 + 82853 0.66 0.98663
Target:  5'- cGGcgG-CgUCGCUaccaGCGCCGUCGUCGc -3'
miRNA:   3'- -CCuaCaGaAGCGAc---UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 203806 0.66 0.988117
Target:  5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3'
miRNA:   3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 184915 0.66 0.988117
Target:  5'- --------cCGUUGcCGCCGCCGUCGg -3'
miRNA:   3'- ccuacagaaGCGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 164469 0.66 0.988117
Target:  5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3'
miRNA:   3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 113811 0.66 0.98663
Target:  5'- cGGcgG-CgUCGUcgGGCACCGCCacGUCGg -3'
miRNA:   3'- -CCuaCaGaAGCGa-CUGUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 123501 0.66 0.988117
Target:  5'- gGGGUGUCgUCGUcGcCGCUGCCGcCc -3'
miRNA:   3'- -CCUACAGaAGCGaCuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 84767 0.67 0.979214
Target:  5'- cGGcgG-CgacgUUGUUGGCACCGCCGa-- -3'
miRNA:   3'- -CCuaCaGa---AGCGACUGUGGCGGCagc -5'
14589 5' -54.2 NC_003521.1 + 3625 0.67 0.980693
Target:  5'- aGGAUGUUgUUGUUcucuagcgugccacGGcCGCCGCCGUCu -3'
miRNA:   3'- -CCUACAGaAGCGA--------------CU-GUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 44306 0.67 0.976957
Target:  5'- gGGcgGg--UUGCUGugGCCGCUG-CGg -3'
miRNA:   3'- -CCuaCagaAGCGACugUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 204740 0.67 0.979214
Target:  5'- aGGGUGgugaUGgaGGCGCCGCCGcCGc -3'
miRNA:   3'- -CCUACagaaGCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 165266 0.67 0.979214
Target:  5'- aGGAgGg---CGCUGGCguaGCCGCCGcCGg -3'
miRNA:   3'- -CCUaCagaaGCGACUG---UGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 214733 0.67 0.974525
Target:  5'- --cUGUCUggGCUucggucaGCGCCGCCGUCu -3'
miRNA:   3'- ccuACAGAagCGAc------UGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 127220 0.67 0.974525
Target:  5'- ---cGUCgUCGCUGGCGCgGUgGUCc -3'
miRNA:   3'- ccuaCAGaAGCGACUGUGgCGgCAGc -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.