miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 184915 0.66 0.988117
Target:  5'- --------cCGUUGcCGCCGCCGUCGg -3'
miRNA:   3'- ccuacagaaGCGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 181369 0.68 0.967937
Target:  5'- uGGuguUGUCguagaccucgagcUCGCUGccggcggcgGCGCCGCUGUCGc -3'
miRNA:   3'- -CCu--ACAGa------------AGCGAC---------UGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 179975 0.7 0.9078
Target:  5'- uGGggGUCUUUGUUcAUgcucucgcggGCCGCCGUCGu -3'
miRNA:   3'- -CCuaCAGAAGCGAcUG----------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 168956 0.66 0.98323
Target:  5'- --cUGUCgccgUCGCUccCGCUGCUGUCGc -3'
miRNA:   3'- ccuACAGa---AGCGAcuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 168389 0.69 0.948068
Target:  5'- aGGAUGUa---GgUGGCguuGCCGCCGUUGg -3'
miRNA:   3'- -CCUACAgaagCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 166121 0.71 0.868355
Target:  5'- gGGAgccgCUgcCGC-GGCGCCGCCGUCGc -3'
miRNA:   3'- -CCUaca-GAa-GCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 166000 0.66 0.988117
Target:  5'- gGGAcgccGUCg-CGCUcGGCGCCGuCCGUCc -3'
miRNA:   3'- -CCUa---CAGaaGCGA-CUGUGGC-GGCAGc -5'
14589 5' -54.2 NC_003521.1 + 165794 0.72 0.838021
Target:  5'- --------cCGCUGGCGCUGCCGUCGc -3'
miRNA:   3'- ccuacagaaGCGACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 165266 0.67 0.979214
Target:  5'- aGGAgGg---CGCUGGCguaGCCGCCGcCGg -3'
miRNA:   3'- -CCUaCagaaGCGACUG---UGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 165176 0.66 0.989473
Target:  5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3'
miRNA:   3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 164469 0.66 0.988117
Target:  5'- ---gGUCgcCGCUGcCGCCGCCG-Ca -3'
miRNA:   3'- ccuaCAGaaGCGACuGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 163251 0.7 0.913617
Target:  5'- cGGcgGUCUUcaaCGCcuUGACGCCGgucUCGUCGg -3'
miRNA:   3'- -CCuaCAGAA---GCG--ACUGUGGC---GGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 160324 0.69 0.948068
Target:  5'- cGGG-GUCaUCGUUGugGuuGUCGUCGu -3'
miRNA:   3'- -CCUaCAGaAGCGACugUggCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 151492 0.72 0.853565
Target:  5'- uGGGUG-CgacaUCGCgGACggugaacuACCGCCGUCGg -3'
miRNA:   3'- -CCUACaGa---AGCGaCUG--------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 143518 0.67 0.974525
Target:  5'- uGGAUGUCgggC-CUGauccgcacgcGCGCCGCCGgCGa -3'
miRNA:   3'- -CCUACAGaa-GcGAC----------UGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 141197 0.7 0.91921
Target:  5'- cGGGUGgccgUggCGCUG-CGCCGCCGggCGc -3'
miRNA:   3'- -CCUACa---GaaGCGACuGUGGCGGCa-GC- -5'
14589 5' -54.2 NC_003521.1 + 140853 0.66 0.989212
Target:  5'- uGGAgcgCUUCGCggucucggccgaGGCGCCGCCGcCc -3'
miRNA:   3'- -CCUacaGAAGCGa-----------CUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 139782 0.71 0.885047
Target:  5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3'
miRNA:   3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 132479 0.73 0.80488
Target:  5'- ---cGUCUUCGgaGA--CCGCCGUCGg -3'
miRNA:   3'- ccuaCAGAAGCgaCUguGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 130752 0.68 0.962923
Target:  5'- aGAgcugGcCUUCGgguacggaCUGACGCUGCUGUCGg -3'
miRNA:   3'- cCUa---CaGAAGC--------GACUGUGGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.