miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 239234 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 233133 0.7 0.915881
Target:  5'- -aGUGUCUUCGCcaccgacaacucugcUugGGCACCGCUGUCc -3'
miRNA:   3'- ccUACAGAAGCG---------------A--CUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 232392 0.67 0.979214
Target:  5'- ---cGUCUcgCGCUGGCugCGCCuG-CGg -3'
miRNA:   3'- ccuaCAGAa-GCGACUGugGCGG-CaGC- -5'
14589 5' -54.2 NC_003521.1 + 226370 0.67 0.974525
Target:  5'- gGGAg--CggCgGCUGACGCCGCCG-Ca -3'
miRNA:   3'- -CCUacaGaaG-CGACUGUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 223769 0.67 0.976957
Target:  5'- ---cGUCcUCGCUGuCGgCGCCGUUa -3'
miRNA:   3'- ccuaCAGaAGCGACuGUgGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 221767 0.68 0.95592
Target:  5'- ---cGUCUgCGCc-GCGCCGCCGUCc -3'
miRNA:   3'- ccuaCAGAaGCGacUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 220944 0.67 0.976957
Target:  5'- aGGA--UCagCGCcGACGCgGCCGUCa -3'
miRNA:   3'- -CCUacAGaaGCGaCUGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 214733 0.67 0.974525
Target:  5'- --cUGUCUggGCUucggucaGCGCCGCCGUCu -3'
miRNA:   3'- ccuACAGAagCGAc------UGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 212665 0.69 0.943816
Target:  5'- aGGgcGUCgcggGCaUGGuCGCCGCCGUCGc -3'
miRNA:   3'- -CCuaCAGaag-CG-ACU-GUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 211616 1.11 0.006468
Target:  5'- gGGAUGUCUUCGCUGACACCGCCGUCGu -3'
miRNA:   3'- -CCUACAGAAGCGACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 210881 0.67 0.979214
Target:  5'- aGGGUGUacgUCGCcucgGugGCCGUCGcCa -3'
miRNA:   3'- -CCUACAga-AGCGa---CugUGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 209817 0.75 0.703183
Target:  5'- ---cGUCcUCGCcGGCGCCGUCGUCGc -3'
miRNA:   3'- ccuaCAGaAGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 204740 0.67 0.979214
Target:  5'- aGGGUGgugaUGgaGGCGCCGCCGcCGc -3'
miRNA:   3'- -CCUACagaaGCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 203806 0.66 0.988117
Target:  5'- aGGAcuccUGUCggUC-CUGACuCCGCCG-CGa -3'
miRNA:   3'- -CCU----ACAGa-AGcGACUGuGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 199361 0.67 0.979214
Target:  5'- gGGAUGUCUUCGCgUGGuccgaggaguaUAgUGuuGUCGu -3'
miRNA:   3'- -CCUACAGAAGCG-ACU-----------GUgGCggCAGC- -5'
14589 5' -54.2 NC_003521.1 + 196141 0.68 0.959526
Target:  5'- ---cGUCcgcUGCUGGCGCUGCCGUUc -3'
miRNA:   3'- ccuaCAGaa-GCGACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 195913 0.66 0.988117
Target:  5'- ---cGUCUUCGUccuCGCCGCCG-CGc -3'
miRNA:   3'- ccuaCAGAAGCGacuGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 193331 0.66 0.989473
Target:  5'- gGGGUGgucgcCUUCGUucccaUGuCGCCGCuCGUCu -3'
miRNA:   3'- -CCUACa----GAAGCG-----ACuGUGGCG-GCAGc -5'
14589 5' -54.2 NC_003521.1 + 188130 0.69 0.943816
Target:  5'- uGGUGgagCg--GCUGGCACCGCCGaCGc -3'
miRNA:   3'- cCUACa--GaagCGACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 187992 0.66 0.988117
Target:  5'- ---cGUCgaUGCUGucgaucucCACCGCCGUCu -3'
miRNA:   3'- ccuaCAGaaGCGACu-------GUGGCGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.