miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 74747 0.68 0.95592
Target:  5'- ---gGUCUccCGaCUGGCGUCGCCGUCGa -3'
miRNA:   3'- ccuaCAGAa-GC-GACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 100690 0.69 0.929725
Target:  5'- uGAUG-CUgaugCGgaGGCGCCGCCG-CGg -3'
miRNA:   3'- cCUACaGAa---GCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 40386 0.69 0.929725
Target:  5'- cGAUGUCggCGUcgUGGCGCaccuCGCUGUCGa -3'
miRNA:   3'- cCUACAGaaGCG--ACUGUG----GCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 126633 0.69 0.929725
Target:  5'- uGAUGUCgUCGUUGAUGCCcgaGCCGaUCa -3'
miRNA:   3'- cCUACAGaAGCGACUGUGG---CGGC-AGc -5'
14589 5' -54.2 NC_003521.1 + 188130 0.69 0.943816
Target:  5'- uGGUGgagCg--GCUGGCACCGCCGaCGc -3'
miRNA:   3'- cCUACa--GaagCGACUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 122233 0.69 0.943816
Target:  5'- cGGGUGcCggCGaCUGAgCGCCGCCacGUCGc -3'
miRNA:   3'- -CCUACaGaaGC-GACU-GUGGCGG--CAGC- -5'
14589 5' -54.2 NC_003521.1 + 62546 0.69 0.948068
Target:  5'- ---cGUCUUCGacccGCACCGCaCGUCGc -3'
miRNA:   3'- ccuaCAGAAGCgac-UGUGGCG-GCAGC- -5'
14589 5' -54.2 NC_003521.1 + 160324 0.69 0.948068
Target:  5'- cGGG-GUCaUCGUUGugGuuGUCGUCGu -3'
miRNA:   3'- -CCUaCAGaAGCGACugUggCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 168389 0.69 0.948068
Target:  5'- aGGAUGUa---GgUGGCguuGCCGCCGUUGg -3'
miRNA:   3'- -CCUACAgaagCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 57978 0.69 0.929725
Target:  5'- ---cGUCcUCGCUGcuguugucaGCGCCGCCGaUCGc -3'
miRNA:   3'- ccuaCAGaAGCGAC---------UGUGGCGGC-AGC- -5'
14589 5' -54.2 NC_003521.1 + 117217 0.7 0.92458
Target:  5'- aGAUGUCgcaccCGCUGACGgCCGCgG-CGg -3'
miRNA:   3'- cCUACAGaa---GCGACUGU-GGCGgCaGC- -5'
14589 5' -54.2 NC_003521.1 + 127044 0.7 0.92458
Target:  5'- ---cGUCg-CGCUGGCcgucGCCGUCGUCGa -3'
miRNA:   3'- ccuaCAGaaGCGACUG----UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 239234 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 132479 0.73 0.80488
Target:  5'- ---cGUCUUCGgaGA--CCGCCGUCGg -3'
miRNA:   3'- ccuaCAGAAGCgaCUguGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 78567 0.73 0.813404
Target:  5'- cGGUGUCgcaccccCGUUGACGCCcaccccgccagcGCCGUCGg -3'
miRNA:   3'- cCUACAGaa-----GCGACUGUGG------------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 165794 0.72 0.838021
Target:  5'- --------cCGCUGGCGCUGCCGUCGc -3'
miRNA:   3'- ccuacagaaGCGACUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 139782 0.71 0.885047
Target:  5'- cGGAUGgguuuggcgucgcccUCggCGgUGGCgaaGCCGCCGUCGa -3'
miRNA:   3'- -CCUAC---------------AGaaGCgACUG---UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 179975 0.7 0.9078
Target:  5'- uGGggGUCUUUGUUcAUgcucucgcggGCCGCCGUCGu -3'
miRNA:   3'- -CCuaCAGAAGCGAcUG----------UGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 87861 0.7 0.913617
Target:  5'- aGGUGUCcUCGCaGGCGCUggccagGCCGUUGg -3'
miRNA:   3'- cCUACAGaAGCGaCUGUGG------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 233133 0.7 0.915881
Target:  5'- -aGUGUCUUCGCcaccgacaacucugcUugGGCACCGCUGUCc -3'
miRNA:   3'- ccUACAGAAGCG---------------A--CUGUGGCGGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.