miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 5' -54.2 NC_003521.1 + 17459 0.76 0.634202
Target:  5'- cGAUGUCgcUGCUGACcaagGCCGCCGcCGa -3'
miRNA:   3'- cCUACAGaaGCGACUG----UGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 221767 0.68 0.95592
Target:  5'- ---cGUCUgCGCc-GCGCCGCCGUCc -3'
miRNA:   3'- ccuaCAGAaGCGacUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 98135 0.68 0.959526
Target:  5'- cGGA-GUCcgugguaGCUGcUGCCGCCGUCGc -3'
miRNA:   3'- -CCUaCAGaag----CGACuGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 165176 0.66 0.989473
Target:  5'- uGGUGggaCUgcgcCGCUGuuGCCGUCGUCa -3'
miRNA:   3'- cCUACa--GAa---GCGACugUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 53440 0.73 0.769389
Target:  5'- cGGAggcUGUUgcCGCUGcuCACCGUCGUCGg -3'
miRNA:   3'- -CCU---ACAGaaGCGACu-GUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 23594 0.72 0.845106
Target:  5'- gGGGUGcuggccugcauccUCUUCGCgaucuGCACCGCCGUgGc -3'
miRNA:   3'- -CCUAC-------------AGAAGCGac---UGUGGCGGCAgC- -5'
14589 5' -54.2 NC_003521.1 + 44123 0.71 0.861057
Target:  5'- uGAaGUCggccgUCGCUgcuccuccuccGACGCCGUCGUCGa -3'
miRNA:   3'- cCUaCAGa----AGCGA-----------CUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 166121 0.71 0.868355
Target:  5'- gGGAgccgCUgcCGC-GGCGCCGCCGUCGc -3'
miRNA:   3'- -CCUaca-GAa-GCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 163251 0.7 0.913617
Target:  5'- cGGcgGUCUUcaaCGCcuUGACGCCGgucUCGUCGg -3'
miRNA:   3'- -CCuaCAGAA---GCG--ACUGUGGC---GGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 121871 0.68 0.95592
Target:  5'- gGGAcUGUCUcgggCGCUGGCccugacgggacGCCGCCGcCc -3'
miRNA:   3'- -CCU-ACAGAa---GCGACUG-----------UGGCGGCaGc -5'
14589 5' -54.2 NC_003521.1 + 212665 0.69 0.943816
Target:  5'- aGGgcGUCgcggGCaUGGuCGCCGCCGUCGc -3'
miRNA:   3'- -CCuaCAGaag-CG-ACU-GUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 28964 0.7 0.913617
Target:  5'- aGGAUGUCUgucCGCgaucgugGuCGCUGCCGUaCGc -3'
miRNA:   3'- -CCUACAGAa--GCGa------CuGUGGCGGCA-GC- -5'
14589 5' -54.2 NC_003521.1 + 209817 0.75 0.703183
Target:  5'- ---cGUCcUCGCcGGCGCCGUCGUCGc -3'
miRNA:   3'- ccuaCAGaAGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 107255 0.69 0.945114
Target:  5'- gGGAUGUCgcucugacguaggCGCUGAUaggcgcuGCCcacgagGCCGUCGa -3'
miRNA:   3'- -CCUACAGaa-----------GCGACUG-------UGG------CGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 39006 0.75 0.712877
Target:  5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3'
miRNA:   3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 24179 0.71 0.889033
Target:  5'- cGGA-GUCUUCGCUuuC-CCGgCGUCGg -3'
miRNA:   3'- -CCUaCAGAAGCGAcuGuGGCgGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 76982 0.68 0.95592
Target:  5'- aGGAaagccacggCUUCGgacgUGACGCCGCCGUCc -3'
miRNA:   3'- -CCUaca------GAAGCg---ACUGUGGCGGCAGc -5'
14589 5' -54.2 NC_003521.1 + 84725 0.68 0.959526
Target:  5'- aGGAga----CGCgGGCACUGCCGUCGu -3'
miRNA:   3'- -CCUacagaaGCGaCUGUGGCGGCAGC- -5'
14589 5' -54.2 NC_003521.1 + 29237 0.74 0.732062
Target:  5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3'
miRNA:   3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5'
14589 5' -54.2 NC_003521.1 + 151492 0.72 0.853565
Target:  5'- uGGGUG-CgacaUCGCgGACggugaacuACCGCCGUCGg -3'
miRNA:   3'- -CCUACaGa---AGCGaCUG--------UGGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.