Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14589 | 5' | -54.2 | NC_003521.1 | + | 74108 | 0.68 | 0.966116 |
Target: 5'- aGGAUGauagCUg-GCUGugGCCGCUGgUCa -3' miRNA: 3'- -CCUACa---GAagCGACugUGGCGGC-AGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 98135 | 0.68 | 0.959526 |
Target: 5'- cGGA-GUCcgugguaGCUGcUGCCGCCGUCGc -3' miRNA: 3'- -CCUaCAGaag----CGACuGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 28964 | 0.7 | 0.913617 |
Target: 5'- aGGAUGUCUgucCGCgaucgugGuCGCUGCCGUaCGc -3' miRNA: 3'- -CCUACAGAa--GCGa------CuGUGGCGGCA-GC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 29237 | 0.74 | 0.732062 |
Target: 5'- aGGAcGUCUcCGggGACACCGCCG-CGa -3' miRNA: 3'- -CCUaCAGAaGCgaCUGUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44494 | 0.66 | 0.98663 |
Target: 5'- uGGAaaUCga-GCUGcaGCCGCCGUCGu -3' miRNA: 3'- -CCUacAGaagCGACugUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44306 | 0.67 | 0.976957 |
Target: 5'- gGGcgGg--UUGCUGugGCCGCUG-CGg -3' miRNA: 3'- -CCuaCagaAGCGACugUGGCGGCaGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 221767 | 0.68 | 0.95592 |
Target: 5'- ---cGUCUgCGCc-GCGCCGCCGUCc -3' miRNA: 3'- ccuaCAGAaGCGacUGUGGCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 39006 | 0.75 | 0.712877 |
Target: 5'- uGGAUGUgg-CGCUG-CACgGCCGUCa -3' miRNA: 3'- -CCUACAgaaGCGACuGUGgCGGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 122721 | 0.67 | 0.974525 |
Target: 5'- aGGcgGUCguggUCGUgggcgacGGCGCCGCCGa-- -3' miRNA: 3'- -CCuaCAGa---AGCGa------CUGUGGCGGCagc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 209817 | 0.75 | 0.703183 |
Target: 5'- ---cGUCcUCGCcGGCGCCGUCGUCGc -3' miRNA: 3'- ccuaCAGaAGCGaCUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 84725 | 0.68 | 0.959526 |
Target: 5'- aGGAga----CGCgGGCACUGCCGUCGu -3' miRNA: 3'- -CCUacagaaGCGaCUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 76417 | 0.68 | 0.966116 |
Target: 5'- cGGcgGUgUgguggUGCUGGCgACCGuuGUCGu -3' miRNA: 3'- -CCuaCAgAa----GCGACUG-UGGCggCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 107255 | 0.69 | 0.945114 |
Target: 5'- gGGAUGUCgcucugacguaggCGCUGAUaggcgcuGCCcacgagGCCGUCGa -3' miRNA: 3'- -CCUACAGaa-----------GCGACUG-------UGG------CGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 163251 | 0.7 | 0.913617 |
Target: 5'- cGGcgGUCUUcaaCGCcuUGACGCCGgucUCGUCGg -3' miRNA: 3'- -CCuaCAGAA---GCG--ACUGUGGC---GGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 44123 | 0.71 | 0.861057 |
Target: 5'- uGAaGUCggccgUCGCUgcuccuccuccGACGCCGUCGUCGa -3' miRNA: 3'- cCUaCAGa----AGCGA-----------CUGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 53440 | 0.73 | 0.769389 |
Target: 5'- cGGAggcUGUUgcCGCUGcuCACCGUCGUCGg -3' miRNA: 3'- -CCU---ACAGaaGCGACu-GUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 166000 | 0.66 | 0.988117 |
Target: 5'- gGGAcgccGUCg-CGCUcGGCGCCGuCCGUCc -3' miRNA: 3'- -CCUa---CAGaaGCGA-CUGUGGC-GGCAGc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 82853 | 0.66 | 0.98663 |
Target: 5'- cGGcgG-CgUCGCUaccaGCGCCGUCGUCGc -3' miRNA: 3'- -CCuaCaGaAGCGAc---UGUGGCGGCAGC- -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 88264 | 0.67 | 0.981302 |
Target: 5'- cGGUGgag-CGCgUGACGCUGCCGUa- -3' miRNA: 3'- cCUACagaaGCG-ACUGUGGCGGCAgc -5' |
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14589 | 5' | -54.2 | NC_003521.1 | + | 165266 | 0.67 | 0.979214 |
Target: 5'- aGGAgGg---CGCUGGCguaGCCGCCGcCGg -3' miRNA: 3'- -CCUaCagaaGCGACUG---UGGCGGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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