miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 225768 0.66 0.897794
Target:  5'- -gCAcgCGCCGCUCGCgcucGCGCCGCu -3'
miRNA:   3'- ggGUa-GUGGUGGGCGaccaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 156222 0.66 0.878501
Target:  5'- gCCGUCACCgacGCCgaGCUGGUcgaccaCACCGa -3'
miRNA:   3'- gGGUAGUGG---UGGg-CGACCAc-----GUGGCg -5'
14590 3' -58.9 NC_003521.1 + 117397 0.66 0.878501
Target:  5'- cUCCGUC-CUAuCCCGCcgucGGUGCcgugcCCGCg -3'
miRNA:   3'- -GGGUAGuGGU-GGGCGa---CCACGu----GGCG- -5'
14590 3' -58.9 NC_003521.1 + 68192 0.66 0.909631
Target:  5'- uCCCGUgCGCuucguuuaCACaCCGCuagUGGUGUauacGCCGCa -3'
miRNA:   3'- -GGGUA-GUG--------GUG-GGCG---ACCACG----UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 195397 0.66 0.897794
Target:  5'- gCCAUgACCGCgCCGaCggcGG-GCACCGg -3'
miRNA:   3'- gGGUAgUGGUG-GGC-Ga--CCaCGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 180536 0.66 0.891565
Target:  5'- aUCGUCACCACcgucuCCGC-GGcGUACCGg -3'
miRNA:   3'- gGGUAGUGGUG-----GGCGaCCaCGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 123488 0.66 0.906167
Target:  5'- gUCCGUCGCCGgcggggugucgucguCgCCGCUGccGC-CCGCa -3'
miRNA:   3'- -GGGUAGUGGU---------------G-GGCGACcaCGuGGCG- -5'
14590 3' -58.9 NC_003521.1 + 42961 0.66 0.897794
Target:  5'- gCCCAgcgagCGCgACCCGCcGGcGCccACCGa -3'
miRNA:   3'- -GGGUa----GUGgUGGGCGaCCaCG--UGGCg -5'
14590 3' -58.9 NC_003521.1 + 190080 0.66 0.903817
Target:  5'- -aCGUUcUgGCCCGCUGcUGCGCCGa -3'
miRNA:   3'- ggGUAGuGgUGGGCGACcACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 116799 0.66 0.909631
Target:  5'- gCCGUCuacgGCCGcgacCCCGaCUGG-GUGCUGCa -3'
miRNA:   3'- gGGUAG----UGGU----GGGC-GACCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 186721 0.66 0.877827
Target:  5'- uUCCGUCACCuaucgacGCCgGCUcgauguagaaccGGuUGCGCCGg -3'
miRNA:   3'- -GGGUAGUGG-------UGGgCGA------------CC-ACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 59530 0.66 0.894081
Target:  5'- aCCAUCGucgaaucgcagcaccCCuuuCCCGCguccgGCGCCGCg -3'
miRNA:   3'- gGGUAGU---------------GGu--GGGCGacca-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 143184 0.66 0.909631
Target:  5'- aCCCggCGCCGCCgCGaacgucgagcCUGagcacgacgacGUGCACUGCa -3'
miRNA:   3'- -GGGuaGUGGUGG-GC----------GAC-----------CACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 150671 0.66 0.897794
Target:  5'- cUCCGgcggcggCGCCGCugCUGCUGGgugcUGCugCGCc -3'
miRNA:   3'- -GGGUa------GUGGUG--GGCGACC----ACGugGCG- -5'
14590 3' -58.9 NC_003521.1 + 153885 0.66 0.891565
Target:  5'- cCUCGUCGuCCAgCgCGCgguagGGgaacaGCGCCGCg -3'
miRNA:   3'- -GGGUAGU-GGUgG-GCGa----CCa----CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 153929 0.66 0.909631
Target:  5'- uUCCAcuccUCgGCCACCCGCc---GCGCCGUc -3'
miRNA:   3'- -GGGU----AG-UGGUGGGCGaccaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 11575 0.66 0.894081
Target:  5'- uCCC-UCACCgcaagcaccuccgcgGCCCGCgGGUccacuggcggGUAUCGCa -3'
miRNA:   3'- -GGGuAGUGG---------------UGGGCGaCCA----------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 152776 0.66 0.909631
Target:  5'- -gCGUCGCCuCCUGCgccuuGcGCACCGCc -3'
miRNA:   3'- ggGUAGUGGuGGGCGac---CaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 60844 0.66 0.906167
Target:  5'- aCCAggACUuCCCGCagguguucgcgcagcUGGUGUgguGCCGCa -3'
miRNA:   3'- gGGUagUGGuGGGCG---------------ACCACG---UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 109817 0.66 0.884478
Target:  5'- gCCAggauguagGCCGCCCGCgucaggcUGG-GUACCGUg -3'
miRNA:   3'- gGGUag------UGGUGGGCG-------ACCaCGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.