miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 226340 0.66 0.878501
Target:  5'- aUgGUgCGCgCGcCCCGCgGGUaGCGCCGCg -3'
miRNA:   3'- gGgUA-GUG-GU-GGGCGaCCA-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 164568 0.66 0.891565
Target:  5'- uCCUcUCGCCACCggUGCUGGcGagacaguaACCGCc -3'
miRNA:   3'- -GGGuAGUGGUGG--GCGACCaCg-------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 186721 0.66 0.877827
Target:  5'- uUCCGUCACCuaucgacGCCgGCUcgauguagaaccGGuUGCGCCGg -3'
miRNA:   3'- -GGGUAGUGG-------UGGgCGA------------CC-ACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 117397 0.66 0.878501
Target:  5'- cUCCGUC-CUAuCCCGCcgucGGUGCcgugcCCGCg -3'
miRNA:   3'- -GGGUAGuGGU-GGGCGa---CCACGu----GGCG- -5'
14590 3' -58.9 NC_003521.1 + 112040 0.66 0.878501
Target:  5'- cCCCG--ACCgcguacugcgacGCCUGCUGGagGaCGCCGCg -3'
miRNA:   3'- -GGGUagUGG------------UGGGCGACCa-C-GUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 41907 0.66 0.890295
Target:  5'- cCCCAUCcucaCGCCCuGCUGG-GCAacgacuuucucaCGCg -3'
miRNA:   3'- -GGGUAGug--GUGGG-CGACCaCGUg-----------GCG- -5'
14590 3' -58.9 NC_003521.1 + 109817 0.66 0.884478
Target:  5'- gCCAggauguagGCCGCCCGCgucaggcUGG-GUACCGUg -3'
miRNA:   3'- gGGUag------UGGUGGGCG-------ACCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 153885 0.66 0.891565
Target:  5'- cCUCGUCGuCCAgCgCGCgguagGGgaacaGCGCCGCg -3'
miRNA:   3'- -GGGUAGU-GGUgG-GCGa----CCa----CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 180536 0.66 0.891565
Target:  5'- aUCGUCACCACcgucuCCGC-GGcGUACCGg -3'
miRNA:   3'- gGGUAGUGGUG-----GGCGaCCaCGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 157268 0.66 0.878501
Target:  5'- aCCCGUCGCCuuUCCGg-GGcaacgGCgGCCGCg -3'
miRNA:   3'- -GGGUAGUGGu-GGGCgaCCa----CG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 71388 0.66 0.909631
Target:  5'- aCCCGcuguUCgaggACCGCCUGCUGGccUACgGCg -3'
miRNA:   3'- -GGGU----AG----UGGUGGGCGACCacGUGgCG- -5'
14590 3' -58.9 NC_003521.1 + 59530 0.66 0.894081
Target:  5'- aCCAUCGucgaaucgcagcaccCCuuuCCCGCguccgGCGCCGCg -3'
miRNA:   3'- gGGUAGU---------------GGu--GGGCGacca-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 232195 0.66 0.878501
Target:  5'- uCCCA-CGCCAugggccCCCGCggguggUGGUGgCugUGCg -3'
miRNA:   3'- -GGGUaGUGGU------GGGCG------ACCAC-GugGCG- -5'
14590 3' -58.9 NC_003521.1 + 112381 0.66 0.885132
Target:  5'- -gCGUCucguCCACCUgGCUGGcgcagUGCGCCGa -3'
miRNA:   3'- ggGUAGu---GGUGGG-CGACC-----ACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 227349 0.66 0.885132
Target:  5'- cCCCGUCGCCcagaCCGUcgacGGcGCuACCGCc -3'
miRNA:   3'- -GGGUAGUGGug--GGCGa---CCaCG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 55850 0.66 0.878501
Target:  5'- gCCuugCACagguCCaCGCUGGcccGCACCGCc -3'
miRNA:   3'- gGGua-GUGgu--GG-GCGACCa--CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 156222 0.66 0.878501
Target:  5'- gCCGUCACCgacGCCgaGCUGGUcgaccaCACCGa -3'
miRNA:   3'- gGGUAGUGG---UGGg-CGACCAc-----GUGGCg -5'
14590 3' -58.9 NC_003521.1 + 43882 0.66 0.885132
Target:  5'- gCCGUCGCC-CaCGCUaccGGUGCuGCCGg -3'
miRNA:   3'- gGGUAGUGGuGgGCGA---CCACG-UGGCg -5'
14590 3' -58.9 NC_003521.1 + 152193 0.66 0.891565
Target:  5'- aCCGUCugCACCCacaGCcGGUcguccuuCACCGUg -3'
miRNA:   3'- gGGUAGugGUGGG---CGaCCAc------GUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 35120 0.66 0.878501
Target:  5'- cCCCGuaaacacuUCGCCGCgacugagCGCgGGUGCGCCacGCg -3'
miRNA:   3'- -GGGU--------AGUGGUGg------GCGaCCACGUGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.