miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 212349 1.12 0.001888
Target:  5'- gCCCAUCACCACCCGCUGGUGCACCGCc -3'
miRNA:   3'- -GGGUAGUGGUGGGCGACCACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 33316 0.88 0.071769
Target:  5'- aCCCAcgucacugcuggCACCACCCGCUGGgcgGCACCGUa -3'
miRNA:   3'- -GGGUa-----------GUGGUGGGCGACCa--CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 206439 0.83 0.144671
Target:  5'- gCCCGagcgcCACCACCUGCUGGUGCGCaaCGCc -3'
miRNA:   3'- -GGGUa----GUGGUGGGCGACCACGUG--GCG- -5'
14590 3' -58.9 NC_003521.1 + 221094 0.83 0.151855
Target:  5'- gCCGUCACCGCCaCGCUGGUcaGCAgCGUg -3'
miRNA:   3'- gGGUAGUGGUGG-GCGACCA--CGUgGCG- -5'
14590 3' -58.9 NC_003521.1 + 2730 0.81 0.197413
Target:  5'- gCCGUCACCGCCuCGCUGGcugGCuGCUGCu -3'
miRNA:   3'- gGGUAGUGGUGG-GCGACCa--CG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 170509 0.79 0.272195
Target:  5'- -gCGUCACCGCCUcgcuGCUGGgcgaccUGCACCGCu -3'
miRNA:   3'- ggGUAGUGGUGGG----CGACC------ACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 111670 0.78 0.283939
Target:  5'- gCCCAUCACCAUCCccuucgaGCUGa-GCGCCGCc -3'
miRNA:   3'- -GGGUAGUGGUGGG-------CGACcaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 165769 0.78 0.309964
Target:  5'- gCCCAUCAUCgugccgaaggccaGCCCGCUGGcGCuGCCGUc -3'
miRNA:   3'- -GGGUAGUGG-------------UGGGCGACCaCG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 17433 0.77 0.317433
Target:  5'- gCCA-CACgGCCCGCgucgGG-GCGCCGCg -3'
miRNA:   3'- gGGUaGUGgUGGGCGa---CCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 164420 0.77 0.331357
Target:  5'- aCCA-CACCGCC-GCUGGUGCuagcagcgccACCGCg -3'
miRNA:   3'- gGGUaGUGGUGGgCGACCACG----------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 185079 0.77 0.338485
Target:  5'- gCCUGUCgcuGCCGCCCGCgcgcUGGgagGCGCUGCg -3'
miRNA:   3'- -GGGUAG---UGGUGGGCG----ACCa--CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 205852 0.77 0.341368
Target:  5'- aCCuUCugCGCCCGCgaucuggccgaccucUGcGUGCGCCGCg -3'
miRNA:   3'- gGGuAGugGUGGGCG---------------AC-CACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 161971 0.77 0.345725
Target:  5'- aCCGgcggaUCACCACCUucgGCUGGUGCuCCGUc -3'
miRNA:   3'- gGGU-----AGUGGUGGG---CGACCACGuGGCG- -5'
14590 3' -58.9 NC_003521.1 + 61135 0.76 0.367341
Target:  5'- gCCCAaCAUCgACCUGCUGGUGCagcucauGCUGCa -3'
miRNA:   3'- -GGGUaGUGG-UGGGCGACCACG-------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 216598 0.76 0.368103
Target:  5'- gCCCGcUGCCcaACCCGCUGGUGCuGCUGUu -3'
miRNA:   3'- -GGGUaGUGG--UGGGCGACCACG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 12651 0.76 0.371161
Target:  5'- -gCGUCACCACgaacagcgcuacaagUgGUUGGUGCGCCGCg -3'
miRNA:   3'- ggGUAGUGGUG---------------GgCGACCACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 14475 0.76 0.383564
Target:  5'- uCCCGcggCGCUACCCGCgGG-GCGCgCGCa -3'
miRNA:   3'- -GGGUa--GUGGUGGGCGaCCaCGUG-GCG- -5'
14590 3' -58.9 NC_003521.1 + 171191 0.76 0.391455
Target:  5'- aCCAaCGCCGa--GCUGGUGCACUGCu -3'
miRNA:   3'- gGGUaGUGGUgggCGACCACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 187425 0.75 0.407551
Target:  5'- gCCCGaCGCCcgcaaggagcuGCagaaGCUGGUGCGCCGCg -3'
miRNA:   3'- -GGGUaGUGG-----------UGgg--CGACCACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 54328 0.75 0.424055
Target:  5'- cUCCGUCACCAggCGCacGGUGCACgGCa -3'
miRNA:   3'- -GGGUAGUGGUggGCGa-CCACGUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.