miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 100482 0.72 0.577904
Target:  5'- gCCGUUGCUACcgCCGCcaGGUgGCACCGCg -3'
miRNA:   3'- gGGUAGUGGUG--GGCGa-CCA-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 138493 0.73 0.538089
Target:  5'- gCCCGUCuACCagcugaucaucacggGCCCGCUGGguccgGCgcaccucgacuucuuGCCGCg -3'
miRNA:   3'- -GGGUAG-UGG---------------UGGGCGACCa----CG---------------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 233129 0.73 0.54938
Target:  5'- cCCCAgugucuUCGCCACCgacaacucUGCuUGG-GCACCGCu -3'
miRNA:   3'- -GGGU------AGUGGUGG--------GCG-ACCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 118027 0.73 0.558844
Target:  5'- uCUCuUCGCCGCCCGCcaggGGUccGCAUUGCu -3'
miRNA:   3'- -GGGuAGUGGUGGGCGa---CCA--CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 140464 0.73 0.558844
Target:  5'- cCCCGUCACCcguCCGCgUGGcuuCGCCGCg -3'
miRNA:   3'- -GGGUAGUGGug-GGCG-ACCac-GUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 111902 0.72 0.568354
Target:  5'- uUCCG-CGCCGCCCGCUucgaccuGUGUACCGa -3'
miRNA:   3'- -GGGUaGUGGUGGGCGAc------CACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 225156 0.72 0.568354
Target:  5'- aCCCAgucgcgCACCACCucggCGCU-GUGCuGCCGCu -3'
miRNA:   3'- -GGGUa-----GUGGUGG----GCGAcCACG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 49567 0.72 0.577904
Target:  5'- -gCAcCACCugCCGCgUGGgccgcgGCGCCGCc -3'
miRNA:   3'- ggGUaGUGGugGGCG-ACCa-----CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 113691 0.72 0.577904
Target:  5'- aUCUG-CGCCGCCUGgaGGUGCACgaCGCg -3'
miRNA:   3'- -GGGUaGUGGUGGGCgaCCACGUG--GCG- -5'
14590 3' -58.9 NC_003521.1 + 173400 0.73 0.521307
Target:  5'- cUCCGcaaaCACCACCCGUggagGGgGCGCUGCu -3'
miRNA:   3'- -GGGUa---GUGGUGGGCGa---CCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 122888 0.74 0.466995
Target:  5'- gCCGUCACCGCUCGCguUGcUGCuauCCGCu -3'
miRNA:   3'- gGGUAGUGGUGGGCG--ACcACGu--GGCG- -5'
14590 3' -58.9 NC_003521.1 + 137339 0.75 0.440951
Target:  5'- aCCUAUCACgCggGCCCGCUGGa--GCCGCc -3'
miRNA:   3'- -GGGUAGUG-G--UGGGCGACCacgUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 221094 0.83 0.151855
Target:  5'- gCCGUCACCGCCaCGCUGGUcaGCAgCGUg -3'
miRNA:   3'- gGGUAGUGGUGG-GCGACCA--CGUgGCG- -5'
14590 3' -58.9 NC_003521.1 + 2730 0.81 0.197413
Target:  5'- gCCGUCACCGCCuCGCUGGcugGCuGCUGCu -3'
miRNA:   3'- gGGUAGUGGUGG-GCGACCa--CG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 165769 0.78 0.309964
Target:  5'- gCCCAUCAUCgugccgaaggccaGCCCGCUGGcGCuGCCGUc -3'
miRNA:   3'- -GGGUAGUGG-------------UGGGCGACCaCG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 164420 0.77 0.331357
Target:  5'- aCCA-CACCGCC-GCUGGUGCuagcagcgccACCGCg -3'
miRNA:   3'- gGGUaGUGGUGGgCGACCACG----------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 61135 0.76 0.367341
Target:  5'- gCCCAaCAUCgACCUGCUGGUGCagcucauGCUGCa -3'
miRNA:   3'- -GGGUaGUGG-UGGGCGACCACG-------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 54328 0.75 0.424055
Target:  5'- cUCCGUCACCAggCGCacGGUGCACgGCa -3'
miRNA:   3'- -GGGUAGUGGUggGCGa-CCACGUGgCG- -5'
14590 3' -58.9 NC_003521.1 + 239706 0.75 0.424055
Target:  5'- uCCCGUCGCCGCCuCGUggacgaUGGUGgcCACCaGCa -3'
miRNA:   3'- -GGGUAGUGGUGG-GCG------ACCAC--GUGG-CG- -5'
14590 3' -58.9 NC_003521.1 + 156580 0.75 0.440951
Target:  5'- gCCAUCGcauCCACCCcgaGgUGGUGCAgCGCg -3'
miRNA:   3'- gGGUAGU---GGUGGG---CgACCACGUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.