miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 1277 0.68 0.802239
Target:  5'- aCCCua-GCCGCCCGCgacgccgacgaaUGGUuccgcuacgGCGCCGg -3'
miRNA:   3'- -GGGuagUGGUGGGCG------------ACCA---------CGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 2275 0.68 0.823654
Target:  5'- cCCCAggacggcCACCucuACCCGCUGGccgacgagcucucGCACCuGCu -3'
miRNA:   3'- -GGGUa------GUGG---UGGGCGACCa------------CGUGG-CG- -5'
14590 3' -58.9 NC_003521.1 + 2730 0.81 0.197413
Target:  5'- gCCGUCACCGCCuCGCUGGcugGCuGCUGCu -3'
miRNA:   3'- gGGUAGUGGUGG-GCGACCa--CG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 4384 0.68 0.810592
Target:  5'- uCCCGcucgcUCACuCACCCGCUcGUGgACCu- -3'
miRNA:   3'- -GGGU-----AGUG-GUGGGCGAcCACgUGGcg -5'
14590 3' -58.9 NC_003521.1 + 8620 0.7 0.693434
Target:  5'- gCCAcCACCACCCGCgGGggccCAUgGCg -3'
miRNA:   3'- gGGUaGUGGUGGGCGaCCac--GUGgCG- -5'
14590 3' -58.9 NC_003521.1 + 11575 0.66 0.894081
Target:  5'- uCCC-UCACCgcaagcaccuccgcgGCCCGCgGGUccacuggcggGUAUCGCa -3'
miRNA:   3'- -GGGuAGUGG---------------UGGGCGaCCA----------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 11929 0.71 0.626055
Target:  5'- cCCCA--GCCggGCCCgGCUGGUGCucCUGCu -3'
miRNA:   3'- -GGGUagUGG--UGGG-CGACCACGu-GGCG- -5'
14590 3' -58.9 NC_003521.1 + 12651 0.76 0.371161
Target:  5'- -gCGUCACCACgaacagcgcuacaagUgGUUGGUGCGCCGCg -3'
miRNA:   3'- ggGUAGUGGUG---------------GgCGACCACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 13929 0.67 0.864653
Target:  5'- gCCG-CGCUGgCCGCcgUGGUGCccCCGCa -3'
miRNA:   3'- gGGUaGUGGUgGGCG--ACCACGu-GGCG- -5'
14590 3' -58.9 NC_003521.1 + 14475 0.76 0.383564
Target:  5'- uCCCGcggCGCUACCCGCgGG-GCGCgCGCa -3'
miRNA:   3'- -GGGUa--GUGGUGGGCGaCCaCGUG-GCG- -5'
14590 3' -58.9 NC_003521.1 + 15274 0.67 0.842493
Target:  5'- cCCCGUCugCACUgcCUGGUGaCGaCGCg -3'
miRNA:   3'- -GGGUAGugGUGGgcGACCAC-GUgGCG- -5'
14590 3' -58.9 NC_003521.1 + 16258 0.66 0.903817
Target:  5'- gCCugcggCugCGCugCCGCUGGUuccugcuggGCGCCGUg -3'
miRNA:   3'- gGGua---GugGUG--GGCGACCA---------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 16403 0.67 0.871673
Target:  5'- gCCCAccacgcagCGCCugGCCgGCgaGGUGUACCGg -3'
miRNA:   3'- -GGGUa-------GUGG--UGGgCGa-CCACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 17433 0.77 0.317433
Target:  5'- gCCA-CACgGCCCGCgucgGG-GCGCCGCg -3'
miRNA:   3'- gGGUaGUGgUGGGCGa---CCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 17690 0.68 0.826859
Target:  5'- aCCCG--GCCAaCUgGCuccUGGUGCugCGCg -3'
miRNA:   3'- -GGGUagUGGU-GGgCG---ACCACGugGCG- -5'
14590 3' -58.9 NC_003521.1 + 17993 0.66 0.909631
Target:  5'- -gUAUCGCCACCCGCaGa--CGCCGUu -3'
miRNA:   3'- ggGUAGUGGUGGGCGaCcacGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 18655 0.66 0.897794
Target:  5'- gCCG-CACgGaCCUGCUGGccacggggGCGCUGCa -3'
miRNA:   3'- gGGUaGUGgU-GGGCGACCa-------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 19785 0.67 0.871673
Target:  5'- aCCCAgguUCACCACaaGaUGGcgaGCGCCGUc -3'
miRNA:   3'- -GGGU---AGUGGUGggCgACCa--CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 19792 0.7 0.721772
Target:  5'- gCCAUgAUCGCCaCGgUGGUGCuguuCUGCu -3'
miRNA:   3'- gGGUAgUGGUGG-GCgACCACGu---GGCG- -5'
14590 3' -58.9 NC_003521.1 + 20635 0.66 0.885132
Target:  5'- gCUCGgagaGCCGCgCGCUGGUggGCGCCu- -3'
miRNA:   3'- -GGGUag--UGGUGgGCGACCA--CGUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.