miRNA display CGI


Results 41 - 60 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 72379 0.66 0.897794
Target:  5'- cCCCAUCACgcucuucaCGCCCGC-----CGCCGCg -3'
miRNA:   3'- -GGGUAGUG--------GUGGGCGaccacGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 103585 0.66 0.897794
Target:  5'- gCCGUCgGCC-CCgGCcGGUGCGCgGg -3'
miRNA:   3'- gGGUAG-UGGuGGgCGaCCACGUGgCg -5'
14590 3' -58.9 NC_003521.1 + 163596 0.66 0.897794
Target:  5'- cCCUGUCGuCC-CCCGUaGGcUGCucuCCGCu -3'
miRNA:   3'- -GGGUAGU-GGuGGGCGaCC-ACGu--GGCG- -5'
14590 3' -58.9 NC_003521.1 + 46158 0.66 0.89718
Target:  5'- aCCAUCcugGCCAUCUGCgugggagUGGUGauggGCUGCa -3'
miRNA:   3'- gGGUAG---UGGUGGGCG-------ACCACg---UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 62009 0.66 0.89718
Target:  5'- uCUCGUCGaucgacCCGCCCGCcGG-GCAugccucgcccgucCCGCg -3'
miRNA:   3'- -GGGUAGU------GGUGGGCGaCCaCGU-------------GGCG- -5'
14590 3' -58.9 NC_003521.1 + 11575 0.66 0.894081
Target:  5'- uCCC-UCACCgcaagcaccuccgcgGCCCGCgGGUccacuggcggGUAUCGCa -3'
miRNA:   3'- -GGGuAGUGG---------------UGGGCGaCCA----------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 59530 0.66 0.894081
Target:  5'- aCCAUCGucgaaucgcagcaccCCuuuCCCGCguccgGCGCCGCg -3'
miRNA:   3'- gGGUAGU---------------GGu--GGGCGacca-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 164568 0.66 0.891565
Target:  5'- uCCUcUCGCCACCggUGCUGGcGagacaguaACCGCc -3'
miRNA:   3'- -GGGuAGUGGUGG--GCGACCaCg-------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 180536 0.66 0.891565
Target:  5'- aUCGUCACCACcgucuCCGC-GGcGUACCGg -3'
miRNA:   3'- gGGUAGUGGUG-----GGCGaCCaCGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 139102 0.66 0.891565
Target:  5'- cCCCAucUCGCC-CCCGCcgc-GCAUCGUg -3'
miRNA:   3'- -GGGU--AGUGGuGGGCGaccaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 122842 0.66 0.891565
Target:  5'- -gCGUCGCgcaGCUcgucguagCGCUGGUGCugGCCGCc -3'
miRNA:   3'- ggGUAGUGg--UGG--------GCGACCACG--UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 88136 0.66 0.891565
Target:  5'- gCCGagCACCGagCCGCUGGaGCgGCUGCu -3'
miRNA:   3'- gGGUa-GUGGUg-GGCGACCaCG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 153885 0.66 0.891565
Target:  5'- cCUCGUCGuCCAgCgCGCgguagGGgaacaGCGCCGCg -3'
miRNA:   3'- -GGGUAGU-GGUgG-GCGa----CCa----CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 152193 0.66 0.891565
Target:  5'- aCCGUCugCACCCacaGCcGGUcguccuuCACCGUg -3'
miRNA:   3'- gGGUAGugGUGGG---CGaCCAc------GUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 35681 0.66 0.891565
Target:  5'- gUCCAcgGCCACCCGgccCUGGUuCACCa- -3'
miRNA:   3'- -GGGUagUGGUGGGC---GACCAcGUGGcg -5'
14590 3' -58.9 NC_003521.1 + 41907 0.66 0.890295
Target:  5'- cCCCAUCcucaCGCCCuGCUGG-GCAacgacuuucucaCGCg -3'
miRNA:   3'- -GGGUAGug--GUGGG-CGACCaCGUg-----------GCG- -5'
14590 3' -58.9 NC_003521.1 + 56301 0.66 0.88773
Target:  5'- -gCAUCACCACCgGCaucgaaacgagagugUGGUGUA-CGUg -3'
miRNA:   3'- ggGUAGUGGUGGgCG---------------ACCACGUgGCG- -5'
14590 3' -58.9 NC_003521.1 + 177557 0.66 0.885132
Target:  5'- aCCCgGUCGCCgaggaaggACUCGUcaaaggUGGcgGCGCCGCc -3'
miRNA:   3'- -GGG-UAGUGG--------UGGGCG------ACCa-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 149352 0.66 0.885132
Target:  5'- aCCCAcgCAUaCACCCGCga--GCugCGCg -3'
miRNA:   3'- -GGGUa-GUG-GUGGGCGaccaCGugGCG- -5'
14590 3' -58.9 NC_003521.1 + 215061 0.66 0.885132
Target:  5'- cCCCuggGCUGCCUGgUGGUGC-CCGg -3'
miRNA:   3'- -GGGuagUGGUGGGCgACCACGuGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.