miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 20725 0.69 0.740333
Target:  5'- aCCCGU-ACCGCUgGC-GGUGCAUCaGCu -3'
miRNA:   3'- -GGGUAgUGGUGGgCGaCCACGUGG-CG- -5'
14590 3' -58.9 NC_003521.1 + 22201 0.67 0.864653
Target:  5'- gCCGcUUACCGCCgcgCGCUGGcgGCcgaACCGUa -3'
miRNA:   3'- gGGU-AGUGGUGG---GCGACCa-CG---UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 22392 0.7 0.712384
Target:  5'- cUCCGUggugcCGCCGCUguCGCUGGccaUGCugCGCg -3'
miRNA:   3'- -GGGUA-----GUGGUGG--GCGACC---ACGugGCG- -5'
14590 3' -58.9 NC_003521.1 + 23062 0.72 0.597102
Target:  5'- aCCCGcUCuCCACCCGCgucugUGGUGuCugCGUc -3'
miRNA:   3'- -GGGU-AGuGGUGGGCG-----ACCAC-GugGCG- -5'
14590 3' -58.9 NC_003521.1 + 23270 0.67 0.857447
Target:  5'- gCCAUgACgGCgaGCgacGUGCACCGCu -3'
miRNA:   3'- gGGUAgUGgUGggCGac-CACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 25038 0.67 0.857447
Target:  5'- cUCC-UCGCUGCCCGUcaUGGUGacguUCGCg -3'
miRNA:   3'- -GGGuAGUGGUGGGCG--ACCACgu--GGCG- -5'
14590 3' -58.9 NC_003521.1 + 26256 0.67 0.871673
Target:  5'- aCCCcUCGCC-CCUGCUGcucagcUGCACCcCg -3'
miRNA:   3'- -GGGuAGUGGuGGGCGACc-----ACGUGGcG- -5'
14590 3' -58.9 NC_003521.1 + 26509 0.69 0.758558
Target:  5'- gCUCuUCACCACCaCGCUGcu-CACCGUg -3'
miRNA:   3'- -GGGuAGUGGUGG-GCGACcacGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 26721 0.73 0.539965
Target:  5'- aCCA-CACCACCCuGCUGGUccugacGC-CCGUg -3'
miRNA:   3'- gGGUaGUGGUGGG-CGACCA------CGuGGCG- -5'
14590 3' -58.9 NC_003521.1 + 27007 0.68 0.802239
Target:  5'- aCUA-CACCGCaCCGUgaugUGGcUGCGCCGUu -3'
miRNA:   3'- gGGUaGUGGUG-GGCG----ACC-ACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 27176 0.67 0.871673
Target:  5'- uUCGUCcCCACCCugcuCUGGUGUuucauccuGCUGCg -3'
miRNA:   3'- gGGUAGuGGUGGGc---GACCACG--------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 27235 0.69 0.776383
Target:  5'- cCUgGUCAUCGCCgGCUGcuacgugGCGCUGCu -3'
miRNA:   3'- -GGgUAGUGGUGGgCGACca-----CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 27331 0.68 0.793747
Target:  5'- gCUgGUCAUCACCCuGUggaugGcGUGCACCGg -3'
miRNA:   3'- -GGgUAGUGGUGGG-CGa----C-CACGUGGCg -5'
14590 3' -58.9 NC_003521.1 + 27392 0.71 0.626055
Target:  5'- gCCCGUCGCUgggagaccaucuGCUCGCgGGUGCugACCaGCg -3'
miRNA:   3'- -GGGUAGUGG------------UGGGCGaCCACG--UGG-CG- -5'
14590 3' -58.9 NC_003521.1 + 28407 0.67 0.834758
Target:  5'- gCCAUCauggGCCugCUGagcCUGGcgGUACCGCu -3'
miRNA:   3'- gGGUAG----UGGugGGC---GACCa-CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 28452 0.73 0.521307
Target:  5'- uUCGUCGCCAUCCaGCcuugggcGGUGCACCaGCg -3'
miRNA:   3'- gGGUAGUGGUGGG-CGa------CCACGUGG-CG- -5'
14590 3' -58.9 NC_003521.1 + 28592 0.67 0.871673
Target:  5'- cCCCGgcgagCGCgaccuCACCCGCuacgUGGUGCugcacGCCGUc -3'
miRNA:   3'- -GGGUa----GUG-----GUGGGCG----ACCACG-----UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 29112 0.71 0.655045
Target:  5'- gCCG-CACCAUCCGCgcgcUGCGCUGCu -3'
miRNA:   3'- gGGUaGUGGUGGGCGacc-ACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 30075 0.67 0.842493
Target:  5'- gCCGUCcccGCCGgCCGCUcacGGUaGCAgCGCc -3'
miRNA:   3'- gGGUAG---UGGUgGGCGA---CCA-CGUgGCG- -5'
14590 3' -58.9 NC_003521.1 + 31273 0.73 0.539965
Target:  5'- aCCGUCGCCGccacCCCGCcgGGcGCauaACCGCg -3'
miRNA:   3'- gGGUAGUGGU----GGGCGa-CCaCG---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.