miRNA display CGI


Results 21 - 40 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 147975 0.66 0.976806
Target:  5'- gGGA-GGCGgaACGAcauGGucAGCguCAGCAGCu -3'
miRNA:   3'- -CCUaCCGC--UGCU---UC--UCGguGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 146658 0.66 0.976806
Target:  5'- cGAcGGCGAgGAGGAcggcaacgaaGCCgACcGCAGCu -3'
miRNA:   3'- cCUaCCGCUgCUUCU----------CGG-UGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 17201 0.66 0.979095
Target:  5'- gGGGcuaUGGCGAgaGAAGAGCgucgccgucgCGCGGUauGGCa -3'
miRNA:   3'- -CCU---ACCGCUg-CUUCUCG----------GUGUCG--UCG- -5'
14590 5' -54.6 NC_003521.1 + 106433 0.66 0.981211
Target:  5'- -cGUGucGCuGGCGAAGcGCaCGCAGUAGCg -3'
miRNA:   3'- ccUAC--CG-CUGCUUCuCG-GUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 219468 0.66 0.979095
Target:  5'- ---cGGC-ACGAGcGA-CCAUAGCAGCg -3'
miRNA:   3'- ccuaCCGcUGCUU-CUcGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 70285 0.66 0.981007
Target:  5'- aGGUcGGCGcCGAAGAgaaagcggugcagGUCGCccAGCAGCg -3'
miRNA:   3'- cCUA-CCGCuGCUUCU-------------CGGUG--UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 239667 0.66 0.974083
Target:  5'- ---aGGCGGCGccGuGGCUcccggggACGGCAGCg -3'
miRNA:   3'- ccuaCCGCUGCuuC-UCGG-------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 142334 0.66 0.976806
Target:  5'- uGGGUGcGCGAgGccGccGCCACGGCcGCc -3'
miRNA:   3'- -CCUAC-CGCUgCuuCu-CGGUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 101721 0.66 0.978874
Target:  5'- cGAUGcGCGGCGggGgcgagauggggaaGGCCgGCAggucguGCGGCg -3'
miRNA:   3'- cCUAC-CGCUGCuuC-------------UCGG-UGU------CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 132635 0.66 0.981211
Target:  5'- ---cGGCGGCGGc--GCCAcCGGCGGUu -3'
miRNA:   3'- ccuaCCGCUGCUucuCGGU-GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 151329 0.66 0.979095
Target:  5'- cGGGUGGCGuCcGAGGGCCu--GC-GCu -3'
miRNA:   3'- -CCUACCGCuGcUUCUCGGuguCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 116858 0.66 0.982594
Target:  5'- cGAccGCGACGAccugcgcgcgcaguGGcgcGGCUGCGGCGGCg -3'
miRNA:   3'- cCUacCGCUGCU--------------UC---UCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 117220 0.66 0.983162
Target:  5'- cGGcgGcugccccuGCGACGcAAGGGCaCGCAucacGCGGCg -3'
miRNA:   3'- -CCuaC--------CGCUGC-UUCUCG-GUGU----CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 29257 0.66 0.982975
Target:  5'- ---cGGCGACGAccAGCCGCucuucaugaguacGGgGGCg -3'
miRNA:   3'- ccuaCCGCUGCUucUCGGUG-------------UCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 163165 0.66 0.976806
Target:  5'- cGGUGGUGGC----AGCaauaACAGCGGCa -3'
miRNA:   3'- cCUACCGCUGcuucUCGg---UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 58421 0.66 0.97434
Target:  5'- cGGcgGuuGACGA--AGCCGCAGC-GCu -3'
miRNA:   3'- -CCuaCcgCUGCUucUCGGUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 214166 0.66 0.979095
Target:  5'- cGGAUGGCuugguCGAcGGGCaguuCGGUGGCa -3'
miRNA:   3'- -CCUACCGcu---GCUuCUCGgu--GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 170531 0.66 0.979961
Target:  5'- uGAcGGgGACGggGGGCaggaggguuuauguaCACAGC-GCg -3'
miRNA:   3'- cCUaCCgCUGCuuCUCG---------------GUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 167528 0.66 0.981211
Target:  5'- cGGUGGUGACGAcAGAcgGCgAUAG-AGCg -3'
miRNA:   3'- cCUACCGCUGCU-UCU--CGgUGUCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 137161 0.66 0.976806
Target:  5'- -cAUGGCcGCG----GCCGCAGCGGCc -3'
miRNA:   3'- ccUACCGcUGCuucuCGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.