miRNA display CGI


Results 1 - 20 of 543 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 147975 0.66 0.976806
Target:  5'- gGGA-GGCGgaACGAcauGGucAGCguCAGCAGCu -3'
miRNA:   3'- -CCUaCCGC--UGCU---UC--UCGguGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 163165 0.66 0.976806
Target:  5'- cGGUGGUGGC----AGCaauaACAGCGGCa -3'
miRNA:   3'- cCUACCGCUGcuucUCGg---UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 239667 0.66 0.974083
Target:  5'- ---aGGCGGCGccGuGGCUcccggggACGGCAGCg -3'
miRNA:   3'- ccuaCCGCUGCuuC-UCGG-------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 59363 0.66 0.976806
Target:  5'- ---aGGCGGCGcgccagccgcuGGAcGCCGC-GCAGCa -3'
miRNA:   3'- ccuaCCGCUGCu----------UCU-CGGUGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 101124 0.66 0.97434
Target:  5'- aGGggGGCGGguCGgcGGGCaCGCGgaaagcGCGGCg -3'
miRNA:   3'- -CCuaCCGCU--GCuuCUCG-GUGU------CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 146658 0.66 0.976806
Target:  5'- cGAcGGCGAgGAGGAcggcaacgaaGCCgACcGCAGCu -3'
miRNA:   3'- cCUaCCGCUgCUUCU----------CGG-UGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 116486 0.66 0.976806
Target:  5'- ---cGGCGAUGAAGAGCguCcguGaCGGCc -3'
miRNA:   3'- ccuaCCGCUGCUUCUCGguGu--C-GUCG- -5'
14590 5' -54.6 NC_003521.1 + 117220 0.66 0.983162
Target:  5'- cGGcgGcugccccuGCGACGcAAGGGCaCGCAucacGCGGCg -3'
miRNA:   3'- -CCuaC--------CGCUGC-UUCUCG-GUGU----CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 222000 0.66 0.974083
Target:  5'- gGGcAUGuGCGGCGuGGgcgggaagcacuuGGCCACgcgaaAGCAGCg -3'
miRNA:   3'- -CC-UAC-CGCUGCuUC-------------UCGGUG-----UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 229403 0.66 0.97434
Target:  5'- cGGGUGGCGgguACGggGA--CACGGCGu- -3'
miRNA:   3'- -CCUACCGC---UGCuuCUcgGUGUCGUcg -5'
14590 5' -54.6 NC_003521.1 + 125214 0.66 0.975348
Target:  5'- uGGUGGCGGCGGcaacgcgggagaaaaAGAaacgacGCgCACGGgGGCg -3'
miRNA:   3'- cCUACCGCUGCU---------------UCU------CG-GUGUCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 58421 0.66 0.97434
Target:  5'- cGGcgGuuGACGA--AGCCGCAGC-GCu -3'
miRNA:   3'- -CCuaCcgCUGCUucUCGGUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 123006 0.66 0.976806
Target:  5'- cGGuucugGGgGACGAAGAGuCCGaGGUAGg -3'
miRNA:   3'- -CCua---CCgCUGCUUCUC-GGUgUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 10505 0.66 0.97434
Target:  5'- gGGAUGGCGugGcccc-CCA-GGCGGCg -3'
miRNA:   3'- -CCUACCGCugCuucucGGUgUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 137161 0.66 0.976806
Target:  5'- -cAUGGCcGCG----GCCGCAGCGGCc -3'
miRNA:   3'- ccUACCGcUGCuucuCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 101721 0.66 0.978874
Target:  5'- cGAUGcGCGGCGggGgcgagauggggaaGGCCgGCAggucguGCGGCg -3'
miRNA:   3'- cCUAC-CGCUGCuuC-------------UCGG-UGU------CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 151329 0.66 0.979095
Target:  5'- cGGGUGGCGuCcGAGGGCCu--GC-GCu -3'
miRNA:   3'- -CCUACCGCuGcUUCUCGGuguCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 142334 0.66 0.976806
Target:  5'- uGGGUGcGCGAgGccGccGCCACGGCcGCc -3'
miRNA:   3'- -CCUAC-CGCUgCuuCu-CGGUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 17201 0.66 0.979095
Target:  5'- gGGGcuaUGGCGAgaGAAGAGCgucgccgucgCGCGGUauGGCa -3'
miRNA:   3'- -CCU---ACCGCUg-CUUCUCG----------GUGUCG--UCG- -5'
14590 5' -54.6 NC_003521.1 + 26883 0.66 0.97434
Target:  5'- uGAUGGCG-CGGAGcAGgugaccgccguCCAC-GCAGCu -3'
miRNA:   3'- cCUACCGCuGCUUC-UC-----------GGUGuCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.