miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 215793 0.76 0.559407
Target:  5'- uGAcgGGCaGCGAGGAGCCggaggaaaaggACGGCAGCg -3'
miRNA:   3'- cCUa-CCGcUGCUUCUCGG-----------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 141968 0.78 0.492082
Target:  5'- ---gGGCGACGAgcgucaGGAGCUGCAGCGGg -3'
miRNA:   3'- ccuaCCGCUGCU------UCUCGGUGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 82798 0.78 0.495835
Target:  5'- aGGUGGaCGACGAAGaAGCCGacgagaggagggcacCGGCGGCa -3'
miRNA:   3'- cCUACC-GCUGCUUC-UCGGU---------------GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 74572 0.78 0.501488
Target:  5'- aGGgcGGCGACGGAGcGGCgGC-GCGGCg -3'
miRNA:   3'- -CCuaCCGCUGCUUC-UCGgUGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 27974 0.77 0.520531
Target:  5'- ---aGGCGGCGcucacGGCCACGGCGGCa -3'
miRNA:   3'- ccuaCCGCUGCuuc--UCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 213658 0.77 0.520531
Target:  5'- aGGGUGGgGACGAAGA-CC--AGCAGCa -3'
miRNA:   3'- -CCUACCgCUGCUUCUcGGugUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 131046 0.77 0.538879
Target:  5'- uGGgcGGCGGCGgcGGGCCucuggacGCGGUGGCg -3'
miRNA:   3'- -CCuaCCGCUGCuuCUCGG-------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 70364 0.77 0.539851
Target:  5'- ---cGGCGGgGuAGAGCCGCAgGCGGCg -3'
miRNA:   3'- ccuaCCGCUgCuUCUCGGUGU-CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 212227 0.77 0.549602
Target:  5'- aGGAUGGUGGCGGu--G-CGCAGCAGCc -3'
miRNA:   3'- -CCUACCGCUGCUucuCgGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 163201 0.78 0.482758
Target:  5'- uGGUGGCGGCGGc-AGCgGCAGUAGCu -3'
miRNA:   3'- cCUACCGCUGCUucUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 86204 0.78 0.482758
Target:  5'- cGGUGGaGGCGAAGGGCgGCGGCAcGCc -3'
miRNA:   3'- cCUACCgCUGCUUCUCGgUGUCGU-CG- -5'
14590 5' -54.6 NC_003521.1 + 209559 0.79 0.441028
Target:  5'- gGGGUGGCGGCGAcgguggcggggguccGGGGgCGCAcGUAGCg -3'
miRNA:   3'- -CCUACCGCUGCU---------------UCUCgGUGU-CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 168423 0.86 0.176072
Target:  5'- gGGcgGGCGGC--AGGGCCGCGGCGGCg -3'
miRNA:   3'- -CCuaCCGCUGcuUCUCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 98956 0.85 0.213995
Target:  5'- cGGGUGGUGGCGGcuAGCgACGGCGGCg -3'
miRNA:   3'- -CCUACCGCUGCUucUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 218691 0.81 0.324996
Target:  5'- aGGgcGGCGGCGAAGgcggaggagacGGCgGCGGCGGCg -3'
miRNA:   3'- -CCuaCCGCUGCUUC-----------UCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 127507 0.81 0.350238
Target:  5'- aGGAUGGCcaccagguugcgguaGugGAAGAGCauguGCGGCGGCa -3'
miRNA:   3'- -CCUACCG---------------CugCUUCUCGg---UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 148770 0.8 0.386552
Target:  5'- uGGGUGcccucggcggucGCGcCGAGGAGCCGCGGCuGCg -3'
miRNA:   3'- -CCUAC------------CGCuGCUUCUCGGUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 63875 0.8 0.394769
Target:  5'- uGGAcgaGGCGGCGcgccGGGAGCUGCAGCAGUu -3'
miRNA:   3'- -CCUa--CCGCUGC----UUCUCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 92002 0.79 0.411536
Target:  5'- cGGAgcggGaGCGGCGAGGcGCgGCGGCGGCg -3'
miRNA:   3'- -CCUa---C-CGCUGCUUCuCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 111386 0.79 0.420083
Target:  5'- ---cGGCGACGGAGGggacgcGCUGCAGCGGCu -3'
miRNA:   3'- ccuaCCGCUGCUUCU------CGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.