miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 1044 0.67 0.965802
Target:  5'- aGAUGGcCGGCGucGGGGCCACcgaccuGCgccAGCu -3'
miRNA:   3'- cCUACC-GCUGCu-UCUCGGUGu-----CG---UCG- -5'
14590 5' -54.6 NC_003521.1 + 1540 0.67 0.965802
Target:  5'- gGGAUGGCGGugggcgaGAAGAGgagaaCGCGG-AGCg -3'
miRNA:   3'- -CCUACCGCUg------CUUCUCg----GUGUCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 1922 0.7 0.893967
Target:  5'- gGGAUGGCGcCGAgccAGA-CCGCAGgAcGCg -3'
miRNA:   3'- -CCUACCGCuGCU---UCUcGGUGUCgU-CG- -5'
14590 5' -54.6 NC_003521.1 + 3174 0.69 0.923554
Target:  5'- aGGAUGGCacgcugcguGGCGAcaAGGGCaACAGCAa- -3'
miRNA:   3'- -CCUACCG---------CUGCU--UCUCGgUGUCGUcg -5'
14590 5' -54.6 NC_003521.1 + 6060 0.73 0.756518
Target:  5'- aGcgGGuCGACGAAGggaaugcgacGGCCGguGCGGCg -3'
miRNA:   3'- cCuaCC-GCUGCUUC----------UCGGUguCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 6374 0.69 0.91809
Target:  5'- cGGucggGGUcGCGGAGGGgcgccgcagcuaCCGCGGCGGCg -3'
miRNA:   3'- -CCua--CCGcUGCUUCUC------------GGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 7412 0.68 0.938576
Target:  5'- cGGAgccaccGG-GGCcAGGAGCCgagACGGCAGCg -3'
miRNA:   3'- -CCUa-----CCgCUGcUUCUCGG---UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 7617 0.78 0.493019
Target:  5'- cGGUGGCGGCGGAcugucgggaacgaccGAcgguaacggcggccGCCACGGCGGCg -3'
miRNA:   3'- cCUACCGCUGCUU---------------CU--------------CGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 7733 0.73 0.737593
Target:  5'- gGGAgGGCGGCGc-GAGCgGCggaGGCGGCg -3'
miRNA:   3'- -CCUaCCGCUGCuuCUCGgUG---UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 7854 0.7 0.884686
Target:  5'- gGGGUGGCgGACGGccuccauggggauGAGCUcCAGCAGg -3'
miRNA:   3'- -CCUACCG-CUGCUu------------CUCGGuGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 7966 0.75 0.649069
Target:  5'- cGGUGucGCGGCcgGGAGGGuCCGCGGCGGCg -3'
miRNA:   3'- cCUAC--CGCUG--CUUCUC-GGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 8916 0.69 0.91809
Target:  5'- ---cGGCGcgggaGAAGAGCCGCuGCcGCa -3'
miRNA:   3'- ccuaCCGCug---CUUCUCGGUGuCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 9151 0.69 0.912397
Target:  5'- aGGAUGaaGACGcAGA-CCACGGCgAGCa -3'
miRNA:   3'- -CCUACcgCUGCuUCUcGGUGUCG-UCG- -5'
14590 5' -54.6 NC_003521.1 + 9384 0.71 0.827338
Target:  5'- cGGaAUGGCGauaaugaagGCGAAGAGCCACcagaagacGCuGGCg -3'
miRNA:   3'- -CC-UACCGC---------UGCUUCUCGGUGu-------CG-UCG- -5'
14590 5' -54.6 NC_003521.1 + 10004 0.68 0.943127
Target:  5'- --cUGGCauuguacAUGGGcAGCCGCAGCAGCg -3'
miRNA:   3'- ccuACCGc------UGCUUcUCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 10505 0.66 0.97434
Target:  5'- gGGAUGGCGugGcccc-CCA-GGCGGCg -3'
miRNA:   3'- -CCUACCGCugCuucucGGUgUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 13039 0.67 0.959104
Target:  5'- cGGAgaacgggGGCGACuccuccgacgagGAAGAGaaCCAgaAGCAGCg -3'
miRNA:   3'- -CCUa------CCGCUG------------CUUCUC--GGUg-UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 13645 0.66 0.981211
Target:  5'- gGGAagGGCGGCGGAG-GCgGgAGaagaGGCu -3'
miRNA:   3'- -CCUa-CCGCUGCUUCuCGgUgUCg---UCG- -5'
14590 5' -54.6 NC_003521.1 + 13681 0.68 0.933797
Target:  5'- aGGGUGGCGGCGAcGAcuuGCgAguGCuuucgAGCg -3'
miRNA:   3'- -CCUACCGCUGCUuCU---CGgUguCG-----UCG- -5'
14590 5' -54.6 NC_003521.1 + 13898 0.69 0.92879
Target:  5'- cGGggGGCccGGCGcggaGGGGGCCGCGGaGGCc -3'
miRNA:   3'- -CCuaCCG--CUGC----UUCUCGGUGUCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.