miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 212383 1.15 0.002845
Target:  5'- uGGAUGGCGACGAAGAGCCACAGCAGCg -3'
miRNA:   3'- -CCUACCGCUGCUUCUCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 123580 0.91 0.095862
Target:  5'- gGGAUGGCGGCGGcgccgGGAGCCGCcGCGGCc -3'
miRNA:   3'- -CCUACCGCUGCU-----UCUCGGUGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 168423 0.86 0.176072
Target:  5'- gGGcgGGCGGC--AGGGCCGCGGCGGCg -3'
miRNA:   3'- -CCuaCCGCUGcuUCUCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 98956 0.85 0.213995
Target:  5'- cGGGUGGUGGCGGcuAGCgACGGCGGCg -3'
miRNA:   3'- -CCUACCGCUGCUucUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 98466 0.84 0.246866
Target:  5'- aGGA-GGCGGCGgcG-GCCGCGGCGGCc -3'
miRNA:   3'- -CCUaCCGCUGCuuCuCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 155247 0.82 0.297064
Target:  5'- uGGUGGUGGUGggGGGCgGCGGCGGCg -3'
miRNA:   3'- cCUACCGCUGCuuCUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 16771 0.82 0.310791
Target:  5'- aGGAgGGUGACGAAGAGUCcCAGgGGCg -3'
miRNA:   3'- -CCUaCCGCUGCUUCUCGGuGUCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 74906 0.82 0.317834
Target:  5'- cGGUGGCGGCGGuGGAGUCGgccCGGCAGCg -3'
miRNA:   3'- cCUACCGCUGCU-UCUCGGU---GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 218691 0.81 0.324996
Target:  5'- aGGgcGGCGGCGAAGgcggaggagacGGCgGCGGCGGCg -3'
miRNA:   3'- -CCuaCCGCUGCUUC-----------UCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 127507 0.81 0.350238
Target:  5'- aGGAUGGCcaccagguugcgguaGugGAAGAGCauguGCGGCGGCa -3'
miRNA:   3'- -CCUACCG---------------CugCUUCUCGg---UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 161232 0.8 0.362589
Target:  5'- cGAUGGCGGCGGc-AGCgGCAGUAGCg -3'
miRNA:   3'- cCUACCGCUGCUucUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 148770 0.8 0.386552
Target:  5'- uGGGUGcccucggcggucGCGcCGAGGAGCCGCGGCuGCg -3'
miRNA:   3'- -CCUAC------------CGCuGCUUCUCGGUGUCGuCG- -5'
14590 5' -54.6 NC_003521.1 + 127055 0.8 0.386552
Target:  5'- aGGAUGGaGACGcGGuGCCGCGGCAGg -3'
miRNA:   3'- -CCUACCgCUGCuUCuCGGUGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 76339 0.8 0.386552
Target:  5'- cGGA-GGCGACGGugacGGCUGCGGCGGCg -3'
miRNA:   3'- -CCUaCCGCUGCUuc--UCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 98613 0.8 0.394769
Target:  5'- aGGccAUGGCGAgGAgggcgAGAGCgGCGGCGGCg -3'
miRNA:   3'- -CC--UACCGCUgCU-----UCUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 63875 0.8 0.394769
Target:  5'- uGGAcgaGGCGGCGcgccGGGAGCUGCAGCAGUu -3'
miRNA:   3'- -CCUa--CCGCUGC----UUCUCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 92002 0.79 0.411536
Target:  5'- cGGAgcggGaGCGGCGAGGcGCgGCGGCGGCg -3'
miRNA:   3'- -CCUa---C-CGCUGCUUCuCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 111386 0.79 0.420083
Target:  5'- ---cGGCGACGGAGGggacgcGCUGCAGCGGCu -3'
miRNA:   3'- ccuaCCGCUGCUUCU------CGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 18883 0.79 0.437496
Target:  5'- uGAgcaGCGACGAGGAcgaggcGCCGCGGCAGCc -3'
miRNA:   3'- cCUac-CGCUGCUUCU------CGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 209559 0.79 0.441028
Target:  5'- gGGGUGGCGGCGAcgguggcggggguccGGGGgCGCAcGUAGCg -3'
miRNA:   3'- -CCUACCGCUGCU---------------UCUCgGUGU-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.