miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 16419 0.67 0.836806
Target:  5'- cUGGCCGGCGAgGugUAcCGgcuGGCCg- -3'
miRNA:   3'- uACCGGCUGCU-CugGU-GCau-CCGGac -5'
14591 5' -58.9 NC_003521.1 + 171278 0.67 0.836806
Target:  5'- uGUGGCCuGCGcuguauCCGCGUGGGCUg- -3'
miRNA:   3'- -UACCGGcUGCucu---GGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 29371 0.67 0.836806
Target:  5'- cAUGGCCuGCcccGACCGCG-AGGCCg- -3'
miRNA:   3'- -UACCGGcUGcu-CUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 225609 0.67 0.836806
Target:  5'- -cGGCCGccugcagccccACGAuGucgggauccACCACGUAGGUCUGc -3'
miRNA:   3'- uaCCGGC-----------UGCU-C---------UGGUGCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 205870 0.67 0.836017
Target:  5'- cUGGCCGAccucugcgugcgcCGcGACUACGaGGGUCUGc -3'
miRNA:   3'- uACCGGCU-------------GCuCUGGUGCaUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 22509 0.67 0.832042
Target:  5'- cGUGGCC-ACGGGuuuCUGCGgugagaggagcgucaUAGGCCUGg -3'
miRNA:   3'- -UACCGGcUGCUCu--GGUGC---------------AUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 113856 0.67 0.828833
Target:  5'- -cGGCCGGCGAcGACgGCGcGGGUUc- -3'
miRNA:   3'- uaCCGGCUGCU-CUGgUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 153036 0.67 0.828833
Target:  5'- -aGGCCGccCGAGACCGacgaGgcGGCCc- -3'
miRNA:   3'- uaCCGGCu-GCUCUGGUg---CauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 79037 0.67 0.828833
Target:  5'- gGUGGCCGGCGuGACagacaugGCGUAGGggguCCg- -3'
miRNA:   3'- -UACCGGCUGCuCUGg------UGCAUCC----GGac -5'
14591 5' -58.9 NC_003521.1 + 127409 0.67 0.828833
Target:  5'- gGUGGUCGugcaGCGcGuuCACGUAGGCCg- -3'
miRNA:   3'- -UACCGGC----UGCuCugGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 145025 0.67 0.828833
Target:  5'- --cGCCGACGcgcuGGAUCGCGU-GGCCg- -3'
miRNA:   3'- uacCGGCUGC----UCUGGUGCAuCCGGac -5'
14591 5' -58.9 NC_003521.1 + 184367 0.67 0.828833
Target:  5'- cGUGGCgCGGCGccucucggaccuGGGCCACGaggcGGCCUu -3'
miRNA:   3'- -UACCG-GCUGC------------UCUGGUGCau--CCGGAc -5'
14591 5' -58.9 NC_003521.1 + 61575 0.67 0.828026
Target:  5'- cUGGCCGGCGAGuucaggcGCCA-GaAGGCCc- -3'
miRNA:   3'- uACCGGCUGCUC-------UGGUgCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 128056 0.67 0.820694
Target:  5'- aGUGGCCGACGc-GCCGCGcgaugccgcccaUGGGCUc- -3'
miRNA:   3'- -UACCGGCUGCucUGGUGC------------AUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 120751 0.67 0.820694
Target:  5'- gGUGGaCCGACG-GACCugaACGUcaagGGGCaCUGc -3'
miRNA:   3'- -UACC-GGCUGCuCUGG---UGCA----UCCG-GAC- -5'
14591 5' -58.9 NC_003521.1 + 176080 0.67 0.820694
Target:  5'- -cGGCCGGCGucuuGGCCACGgcGuCCa- -3'
miRNA:   3'- uaCCGGCUGCu---CUGGUGCauCcGGac -5'
14591 5' -58.9 NC_003521.1 + 151321 0.67 0.812399
Target:  5'- -cGGCCaGGCGGG-UgGCGUccgaGGGCCUGc -3'
miRNA:   3'- uaCCGG-CUGCUCuGgUGCA----UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 74524 0.67 0.812399
Target:  5'- cUGGCCGuacgcaACGAGGCCACGcGGaccaGCCg- -3'
miRNA:   3'- uACCGGC------UGCUCUGGUGCaUC----CGGac -5'
14591 5' -58.9 NC_003521.1 + 91508 0.67 0.812399
Target:  5'- -aGG-CG-UGAGACCACGgcGGCCg- -3'
miRNA:   3'- uaCCgGCuGCUCUGGUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 208749 0.67 0.812399
Target:  5'- cUGGCCGugGccacGGGCCaguACGU-GGUCUGu -3'
miRNA:   3'- uACCGGCugC----UCUGG---UGCAuCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.