miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 36606 0.66 0.858941
Target:  5'- gGUGGCCGACGAcucgcacGACU-UGUGGugcGCCUGc -3'
miRNA:   3'- -UACCGGCUGCU-------CUGGuGCAUC---CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 36680 0.67 0.803953
Target:  5'- -cGGCCGAgcUGAGGCCGgGcuccGGcGCCUGg -3'
miRNA:   3'- uaCCGGCU--GCUCUGGUgCa---UC-CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 36872 0.66 0.88085
Target:  5'- -gGGCCGGCaagcggguGACCACGUacGGGCa-- -3'
miRNA:   3'- uaCCGGCUGcu------CUGGUGCA--UCCGgac -5'
14591 5' -58.9 NC_003521.1 + 43429 0.66 0.88085
Target:  5'- cGUGcCCGACGAGgagGCgGCGgcGGcCCUGg -3'
miRNA:   3'- -UACcGGCUGCUC---UGgUGCauCC-GGAC- -5'
14591 5' -58.9 NC_003521.1 + 43485 0.68 0.750544
Target:  5'- -cGGCCGugcuGGCCGCGgcGGCCa- -3'
miRNA:   3'- uaCCGGCugcuCUGGUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 45746 0.66 0.859677
Target:  5'- -aGGCCGgguuuuguagcGCGAGACCGCGUcAGGa--- -3'
miRNA:   3'- uaCCGGC-----------UGCUCUGGUGCA-UCCggac -5'
14591 5' -58.9 NC_003521.1 + 46436 0.66 0.88085
Target:  5'- -gGGuauCCGGCGGGGCUGCGgGGGCUg- -3'
miRNA:   3'- uaCC---GGCUGCUCUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 53352 0.66 0.859677
Target:  5'- --cGCCGGCGcGGCgGCGgagGGGCCg- -3'
miRNA:   3'- uacCGGCUGCuCUGgUGCa--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 53959 0.73 0.488516
Target:  5'- -gGGCCGACGAGccgugcugcacgccGCCGC-UGGGCCg- -3'
miRNA:   3'- uaCCGGCUGCUC--------------UGGUGcAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 54290 0.66 0.859677
Target:  5'- -aGGCCGuuGCGGcuGGCCACGUAGaGCa-- -3'
miRNA:   3'- uaCCGGC--UGCU--CUGGUGCAUC-CGgac -5'
14591 5' -58.9 NC_003521.1 + 54452 0.68 0.768816
Target:  5'- -gGGCCGACGGGGCgAUGguuaucgacGCCUGc -3'
miRNA:   3'- uaCCGGCUGCUCUGgUGCauc------CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 56844 0.66 0.87399
Target:  5'- -cGGCCuaucaGGCG-GACUACG-GGGCCUa -3'
miRNA:   3'- uaCCGG-----CUGCuCUGGUGCaUCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 58488 0.69 0.720542
Target:  5'- aAUGGCCcagacagGugGuGACCACGUagaucgcGGGCUUGu -3'
miRNA:   3'- -UACCGG-------CugCuCUGGUGCA-------UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 61575 0.67 0.828026
Target:  5'- cUGGCCGGCGAGuucaggcGCCA-GaAGGCCc- -3'
miRNA:   3'- uACCGGCUGCUC-------UGGUgCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 69495 0.69 0.72244
Target:  5'- gGUGGUcguagaCGGCGcAGGCCGCGUugAGGCCc- -3'
miRNA:   3'- -UACCG------GCUGC-UCUGGUGCA--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 70107 0.69 0.731891
Target:  5'- cUGGCCGGCGugccgccgaaGGGCCGCuaucaGGGCCUc -3'
miRNA:   3'- uACCGGCUGC----------UCUGGUGca---UCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 72965 0.66 0.87399
Target:  5'- --uGCCGACcucaugaagaaGcGGCCGCGggGGGCCUGg -3'
miRNA:   3'- uacCGGCUG-----------CuCUGGUGCa-UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 72983 0.71 0.615519
Target:  5'- --aGCCGACGAGcCCGCGgcGGUCg- -3'
miRNA:   3'- uacCGGCUGCUCuGGUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 74524 0.67 0.812399
Target:  5'- cUGGCCGuacgcaACGAGGCCACGcGGaccaGCCg- -3'
miRNA:   3'- uACCGGC------UGCUCUGGUGCaUC----CGGac -5'
14591 5' -58.9 NC_003521.1 + 75265 0.67 0.836806
Target:  5'- aGUGGCCG-UGuGAUC-CGUAGGCUg- -3'
miRNA:   3'- -UACCGGCuGCuCUGGuGCAUCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.