miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 979 0.69 0.703335
Target:  5'- -aGGCCGGCGGucugcuCC-CGUGGGCCg- -3'
miRNA:   3'- uaCCGGCUGCUcu----GGuGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 1841 0.67 0.803953
Target:  5'- cAUGGCgGACGAcaGACCGgGacgGGGCCc- -3'
miRNA:   3'- -UACCGgCUGCU--CUGGUgCa--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 2299 0.69 0.731891
Target:  5'- cUGGCCGACGAGcucucgcaccuGCUGCGcgccGGCCUc -3'
miRNA:   3'- uACCGGCUGCUC-----------UGGUGCau--CCGGAc -5'
14591 5' -58.9 NC_003521.1 + 5826 0.67 0.842287
Target:  5'- -aGGCCaGGgggaccgcuaccgcUGGGACCgcACGUAGGCCUc -3'
miRNA:   3'- uaCCGG-CU--------------GCUCUGG--UGCAUCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 7383 0.74 0.429214
Target:  5'- uUGGCCaGAaGGGACCGCGUcgAGGCCg- -3'
miRNA:   3'- uACCGG-CUgCUCUGGUGCA--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 10493 0.66 0.887508
Target:  5'- cAUGcGCCGGCgGGGAUgGCGU-GGCCc- -3'
miRNA:   3'- -UAC-CGGCUG-CUCUGgUGCAuCCGGac -5'
14591 5' -58.9 NC_003521.1 + 13536 0.66 0.86693
Target:  5'- gAUGaCCGACGuGACCugGgAGGUCg- -3'
miRNA:   3'- -UACcGGCUGCuCUGGugCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 13902 0.69 0.72244
Target:  5'- -gGGcCCGGCGcggaggGGGCCGCGgAGGCCg- -3'
miRNA:   3'- uaCC-GGCUGC------UCUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 15233 0.67 0.803953
Target:  5'- -cGGCCGagcGCGAGGCCGCcgAGcGCCa- -3'
miRNA:   3'- uaCCGGC---UGCUCUGGUGcaUC-CGGac -5'
14591 5' -58.9 NC_003521.1 + 16419 0.67 0.836806
Target:  5'- cUGGCCGGCGAgGugUAcCGgcuGGCCg- -3'
miRNA:   3'- uACCGGCUGCU-CugGU-GCau-CCGGac -5'
14591 5' -58.9 NC_003521.1 + 18653 0.67 0.8031
Target:  5'- -gGGCCGcACGGaccugcuGGCCACGgGGGCgCUGc -3'
miRNA:   3'- uaCCGGC-UGCU-------CUGGUGCaUCCG-GAC- -5'
14591 5' -58.9 NC_003521.1 + 18763 0.72 0.557151
Target:  5'- -aGGacaaCGACGAGACCACGcAGGCg-- -3'
miRNA:   3'- uaCCg---GCUGCUCUGGUGCaUCCGgac -5'
14591 5' -58.9 NC_003521.1 + 19456 0.71 0.59595
Target:  5'- -aGGCgCGGCGGGACCAUGUcgcugcgcGGCCa- -3'
miRNA:   3'- uaCCG-GCUGCUCUGGUGCAu-------CCGGac -5'
14591 5' -58.9 NC_003521.1 + 22509 0.67 0.832042
Target:  5'- cGUGGCC-ACGGGuuuCUGCGgugagaggagcgucaUAGGCCUGg -3'
miRNA:   3'- -UACCGGcUGCUCu--GGUGC---------------AUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 25573 0.69 0.72244
Target:  5'- -cGGCCG-CGGGGaCAgGUGGGCUUGu -3'
miRNA:   3'- uaCCGGCuGCUCUgGUgCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 28342 0.68 0.750544
Target:  5'- -cGGCCauguGCGuguGGGCCACGggccuGGCCUGg -3'
miRNA:   3'- uaCCGGc---UGC---UCUGGUGCau---CCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 29371 0.67 0.836806
Target:  5'- cAUGGCCuGCcccGACCGCG-AGGCCg- -3'
miRNA:   3'- -UACCGGcUGcu-CUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 29897 0.69 0.703335
Target:  5'- cUGGgCGACGAcGACCGacgacccguggcCGUcaaGGGCCUGg -3'
miRNA:   3'- uACCgGCUGCU-CUGGU------------GCA---UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 35800 0.7 0.664523
Target:  5'- -aGGCCGACuacGGCgGCGUGGGCgaGa -3'
miRNA:   3'- uaCCGGCUGcu-CUGgUGCAUCCGgaC- -5'
14591 5' -58.9 NC_003521.1 + 35970 0.68 0.768816
Target:  5'- gAUGGgCGACGAgGACgACGaaccGGGCUUGg -3'
miRNA:   3'- -UACCgGCUGCU-CUGgUGCa---UCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.