miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 212499 1.07 0.003435
Target:  5'- cAUGGCCGACGAGACCACGUAGGCCUGg -3'
miRNA:   3'- -UACCGGCUGCUCUGGUGCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 181223 0.8 0.197881
Target:  5'- gAUGGCCGAucgcCGucguuGACCACGUAGGCCa- -3'
miRNA:   3'- -UACCGGCU----GCu----CUGGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 113391 0.79 0.233371
Target:  5'- cUGGCCGACGAG-CCGCuGgcGGCCUa -3'
miRNA:   3'- uACCGGCUGCUCuGGUG-CauCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 183686 0.78 0.26792
Target:  5'- cGUGGCCGACGAGACCuaucgcuuCGUGGaGCUg- -3'
miRNA:   3'- -UACCGGCUGCUCUGGu-------GCAUC-CGGac -5'
14591 5' -58.9 NC_003521.1 + 206661 0.77 0.31955
Target:  5'- uUGGCCcGCGAccucaaggccuucGugCGCGUGGGCCUGg -3'
miRNA:   3'- uACCGGcUGCU-------------CugGUGCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 109362 0.75 0.372025
Target:  5'- -aGGCCGACGAGGCCgagaGCGc-GGCCUu -3'
miRNA:   3'- uaCCGGCUGCUCUGG----UGCauCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 7383 0.74 0.429214
Target:  5'- uUGGCCaGAaGGGACCGCGUcgAGGCCg- -3'
miRNA:   3'- uACCGG-CUgCUCUGGUGCA--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 137541 0.74 0.464129
Target:  5'- gGUGGCCuacGACGAGACgGCGccGGCCg- -3'
miRNA:   3'- -UACCGG---CUGCUCUGgUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 53959 0.73 0.488516
Target:  5'- -gGGCCGACGAGccgugcugcacgccGCCGC-UGGGCCg- -3'
miRNA:   3'- uaCCGGCUGCUC--------------UGGUGcAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 76507 0.73 0.500471
Target:  5'- -cGGCCagaGCGGGACCGCGcgacaccaGGGCCUGc -3'
miRNA:   3'- uaCCGGc--UGCUCUGGUGCa-------UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 84881 0.73 0.519109
Target:  5'- cAUGGCCGAgaagagcagaccCGAGACCagcgaguagGCGUAgccGGCCUGc -3'
miRNA:   3'- -UACCGGCU------------GCUCUGG---------UGCAU---CCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 131325 0.72 0.52853
Target:  5'- -cGGCCGGCGcGACCACucgcuggAGcGCCUGg -3'
miRNA:   3'- uaCCGGCUGCuCUGGUGca-----UC-CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 207672 0.72 0.538015
Target:  5'- -aGGCCGACGAGGCCAac--GGCUUc -3'
miRNA:   3'- uaCCGGCUGCUCUGGUgcauCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 161478 0.72 0.547556
Target:  5'- cUGGCCGuguccuuugcGCGAGAcCCugGUGGGUCg- -3'
miRNA:   3'- uACCGGC----------UGCUCU-GGugCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 18763 0.72 0.557151
Target:  5'- -aGGacaaCGACGAGACCACGcAGGCg-- -3'
miRNA:   3'- uaCCg---GCUGCUCUGGUGCaUCCGgac -5'
14591 5' -58.9 NC_003521.1 + 103830 0.71 0.576478
Target:  5'- gGUGGCUGuACaGGGGCCGCGUcucGGCCUc -3'
miRNA:   3'- -UACCGGC-UG-CUCUGGUGCAu--CCGGAc -5'
14591 5' -58.9 NC_003521.1 + 166102 0.71 0.576478
Target:  5'- -gGGCCGGCaGGuuCACGcGGGCCUGc -3'
miRNA:   3'- uaCCGGCUGcUCugGUGCaUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 97594 0.71 0.584252
Target:  5'- gAUGGCCGcCGAGAagaCACGgcgacggcuccGGCCUGg -3'
miRNA:   3'- -UACCGGCuGCUCUg--GUGCau---------CCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 177785 0.71 0.594973
Target:  5'- -gGGCCGACGGGGCcuguccgCugGUGGGCg-- -3'
miRNA:   3'- uaCCGGCUGCUCUG-------GugCAUCCGgac -5'
14591 5' -58.9 NC_003521.1 + 213749 0.71 0.59595
Target:  5'- -aGGCCGugGuggcGGCCACGUAgaagauGGCCa- -3'
miRNA:   3'- uaCCGGCugCu---CUGGUGCAU------CCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.