miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 10493 0.66 0.887508
Target:  5'- cAUGcGCCGGCgGGGAUgGCGU-GGCCc- -3'
miRNA:   3'- -UAC-CGGCUG-CUCUGgUGCAuCCGGac -5'
14591 5' -58.9 NC_003521.1 + 45746 0.66 0.859677
Target:  5'- -aGGCCGgguuuuguagcGCGAGACCGCGUcAGGa--- -3'
miRNA:   3'- uaCCGGC-----------UGCUCUGGUGCA-UCCggac -5'
14591 5' -58.9 NC_003521.1 + 117469 0.66 0.858203
Target:  5'- -cGGCUGuCgGAGGCCACGgccgcggcgcugGGGCCg- -3'
miRNA:   3'- uaCCGGCuG-CUCUGGUGCa-----------UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 130289 0.66 0.887508
Target:  5'- -cGGCUaccugGGCGAGGCCGCGgc-GCCg- -3'
miRNA:   3'- uaCCGG-----CUGCUCUGGUGCaucCGGac -5'
14591 5' -58.9 NC_003521.1 + 43429 0.66 0.88085
Target:  5'- cGUGcCCGACGAGgagGCgGCGgcGGcCCUGg -3'
miRNA:   3'- -UACcGGCUGCUC---UGgUGCauCC-GGAC- -5'
14591 5' -58.9 NC_003521.1 + 36872 0.66 0.88085
Target:  5'- -gGGCCGGCaagcggguGACCACGUacGGGCa-- -3'
miRNA:   3'- uaCCGGCUGcu------CUGGUGCA--UCCGgac -5'
14591 5' -58.9 NC_003521.1 + 170841 0.66 0.887508
Target:  5'- --uGCaCGACGAGACgCGCGUcGGCUUc -3'
miRNA:   3'- uacCG-GCUGCUCUG-GUGCAuCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 206574 0.66 0.859677
Target:  5'- -aGGgCGACGGGGCCGac-AGGCCc- -3'
miRNA:   3'- uaCCgGCUGCUCUGGUgcaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 188343 0.66 0.859677
Target:  5'- --aGCCGA--AGACCACGaGGGCCg- -3'
miRNA:   3'- uacCGGCUgcUCUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 46436 0.66 0.88085
Target:  5'- -gGGuauCCGGCGGGGCUGCGgGGGCUg- -3'
miRNA:   3'- uaCC---GGCUGCUCUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 111800 0.66 0.852235
Target:  5'- -cGGCCGAC---GCCAUGgagcgcGGCCUGa -3'
miRNA:   3'- uaCCGGCUGcucUGGUGCau----CCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 107303 0.66 0.873293
Target:  5'- gAUGGCCGugagguuGCGAGAUCGCuggcaGUAGGgCUc -3'
miRNA:   3'- -UACCGGC-------UGCUCUGGUG-----CAUCCgGAc -5'
14591 5' -58.9 NC_003521.1 + 105895 0.66 0.86693
Target:  5'- --uGCCGGgGGcGugUACGUAGGCCg- -3'
miRNA:   3'- uacCGGCUgCU-CugGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 54290 0.66 0.859677
Target:  5'- -aGGCCGuuGCGGcuGGCCACGUAGaGCa-- -3'
miRNA:   3'- uaCCGGC--UGCU--CUGGUGCAUC-CGgac -5'
14591 5' -58.9 NC_003521.1 + 215463 0.66 0.852235
Target:  5'- -aGGCCGAgGGaGCCACGaAGGCg-- -3'
miRNA:   3'- uaCCGGCUgCUcUGGUGCaUCCGgac -5'
14591 5' -58.9 NC_003521.1 + 173255 0.66 0.859677
Target:  5'- cUGGCCcGCGGGGCC-CGcc-GCCUGa -3'
miRNA:   3'- uACCGGcUGCUCUGGuGCaucCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 36606 0.66 0.858941
Target:  5'- gGUGGCCGACGAcucgcacGACU-UGUGGugcGCCUGc -3'
miRNA:   3'- -UACCGGCUGCU-------CUGGuGCAUC---CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 153715 0.66 0.852235
Target:  5'- -aGGUgGugGGcGCCACGcAGGCCUu -3'
miRNA:   3'- uaCCGgCugCUcUGGUGCaUCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 214461 0.66 0.866214
Target:  5'- -cGG-CGGCGcugaaggagaggaAGGCCACGUagAGGCCUa -3'
miRNA:   3'- uaCCgGCUGC-------------UCUGGUGCA--UCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 103279 0.66 0.86693
Target:  5'- -cGGCCGGCGccgucuCguCGUAGGCCa- -3'
miRNA:   3'- uaCCGGCUGCucu---GguGCAUCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.