miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 112883 0.68 0.750544
Target:  5'- cUGGCCGACGAcgucaGCCGCG-AGaucgccGCCUGg -3'
miRNA:   3'- uACCGGCUGCUc----UGGUGCaUC------CGGAC- -5'
14591 5' -58.9 NC_003521.1 + 58488 0.69 0.720542
Target:  5'- aAUGGCCcagacagGugGuGACCACGUagaucgcGGGCUUGu -3'
miRNA:   3'- -UACCGG-------CugCuCUGGUGCA-------UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 25573 0.69 0.72244
Target:  5'- -cGGCCG-CGGGGaCAgGUGGGCUUGu -3'
miRNA:   3'- uaCCGGCuGCUCUgGUgCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 69495 0.69 0.72244
Target:  5'- gGUGGUcguagaCGGCGcAGGCCGCGUugAGGCCc- -3'
miRNA:   3'- -UACCG------GCUGC-UCUGGUGCA--UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 70107 0.69 0.731891
Target:  5'- cUGGCCGGCGugccgccgaaGGGCCGCuaucaGGGCCUc -3'
miRNA:   3'- uACCGGCUGC----------UCUGGUGca---UCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 202527 0.69 0.731891
Target:  5'- cUGGCCGACGAGcucucgcaccuGCUGCGcgccGGCCUc -3'
miRNA:   3'- uACCGGCUGCUC-----------UGGUGCau--CCGGAc -5'
14591 5' -58.9 NC_003521.1 + 219402 0.69 0.731891
Target:  5'- -gGGCaCGACGAGGCCGaGUAGcuGCCa- -3'
miRNA:   3'- uaCCG-GCUGCUCUGGUgCAUC--CGGac -5'
14591 5' -58.9 NC_003521.1 + 88071 0.68 0.74962
Target:  5'- gGUGGUCGGCGGcgcccguGACCACG--GGCCa- -3'
miRNA:   3'- -UACCGGCUGCU-------CUGGUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 43485 0.68 0.750544
Target:  5'- -cGGCCGugcuGGCCGCGgcGGCCa- -3'
miRNA:   3'- uaCCGGCugcuCUGGUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 78803 0.7 0.664523
Target:  5'- -aGGUCGACGAGcggcCCugGUGGcGCCa- -3'
miRNA:   3'- uaCCGGCUGCUCu---GGugCAUC-CGGac -5'
14591 5' -58.9 NC_003521.1 + 234758 0.7 0.654741
Target:  5'- -cGGCUGGCGuGAUCACGcccugcgGGGCCg- -3'
miRNA:   3'- uaCCGGCUGCuCUGGUGCa------UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 140596 0.7 0.635135
Target:  5'- -cGGCCGGCGAGAcgcuCCGCuucgaggAGGCCg- -3'
miRNA:   3'- uaCCGGCUGCUCU----GGUGca-----UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 181223 0.8 0.197881
Target:  5'- gAUGGCCGAucgcCGucguuGACCACGUAGGCCa- -3'
miRNA:   3'- -UACCGGCU----GCu----CUGGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 76507 0.73 0.500471
Target:  5'- -cGGCCagaGCGGGACCGCGcgacaccaGGGCCUGc -3'
miRNA:   3'- uaCCGGc--UGCUCUGGUGCa-------UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 103830 0.71 0.576478
Target:  5'- gGUGGCUGuACaGGGGCCGCGUcucGGCCUc -3'
miRNA:   3'- -UACCGGC-UG-CUCUGGUGCAu--CCGGAc -5'
14591 5' -58.9 NC_003521.1 + 166102 0.71 0.576478
Target:  5'- -gGGCCGGCaGGuuCACGcGGGCCUGc -3'
miRNA:   3'- uaCCGGCUGcUCugGUGCaUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 97594 0.71 0.584252
Target:  5'- gAUGGCCGcCGAGAagaCACGgcgacggcuccGGCCUGg -3'
miRNA:   3'- -UACCGGCuGCUCUg--GUGCau---------CCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 213749 0.71 0.59595
Target:  5'- -aGGCCGugGuggcGGCCACGUAgaagauGGCCa- -3'
miRNA:   3'- uaCCGGCugCu---CUGGUGCAU------CCGGac -5'
14591 5' -58.9 NC_003521.1 + 72983 0.71 0.615519
Target:  5'- --aGCCGACGAGcCCGCGgcGGUCg- -3'
miRNA:   3'- uacCGGCUGCUCuGGUGCauCCGGac -5'
14591 5' -58.9 NC_003521.1 + 150727 0.71 0.615519
Target:  5'- -cGGCCGugG--GCCACGUccuGGGCCg- -3'
miRNA:   3'- uaCCGGCugCucUGGUGCA---UCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.