miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 113350 0.67 0.773625
Target:  5'- -uGACGCgcaucUCGGCGCUgGCGGGCGu -3'
miRNA:   3'- uuCUGCGacc--AGUCGUGGgCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 26203 0.67 0.773625
Target:  5'- cAGcACGCUGGUCuggcugGGCuACCCGC-AGCu -3'
miRNA:   3'- uUC-UGCGACCAG------UCG-UGGGCGcUCGu -5'
14592 3' -59.5 NC_003521.1 + 153494 0.67 0.773625
Target:  5'- cGGGcCGuCUGGUCAGCGCCaGCGuggaccGCAc -3'
miRNA:   3'- -UUCuGC-GACCAGUCGUGGgCGCu-----CGU- -5'
14592 3' -59.5 NC_003521.1 + 7442 0.67 0.773625
Target:  5'- cGGACGC-GGcgcaCAGCACCaCGCGGGaCGu -3'
miRNA:   3'- uUCUGCGaCCa---GUCGUGG-GCGCUC-GU- -5'
14592 3' -59.5 NC_003521.1 + 31492 0.67 0.773625
Target:  5'- -cGuCGCgGGUUGGCacaggcccaGCCCGUGGGCAa -3'
miRNA:   3'- uuCuGCGaCCAGUCG---------UGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 138266 0.67 0.772722
Target:  5'- -uGGCGaCUGGUCuccaagggccagaAGCA-CCGCGAGUAu -3'
miRNA:   3'- uuCUGC-GACCAG-------------UCGUgGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 99601 0.67 0.764549
Target:  5'- -cGGCGCguUGGUgaccugCAGCGCCCGgCGGcGCAg -3'
miRNA:   3'- uuCUGCG--ACCA------GUCGUGGGC-GCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 130476 0.67 0.764549
Target:  5'- ---gUGCUGGccCAGCuACaCCGCGAGCGc -3'
miRNA:   3'- uucuGCGACCa-GUCG-UG-GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 155483 0.67 0.764549
Target:  5'- aGAGACGCcGGccugCGGCgGgCCGCGGGCc -3'
miRNA:   3'- -UUCUGCGaCCa---GUCG-UgGGCGCUCGu -5'
14592 3' -59.5 NC_003521.1 + 44944 0.67 0.764549
Target:  5'- -uGACGCUGGggaugggCAGU-CCCGaGAGCGa -3'
miRNA:   3'- uuCUGCGACCa------GUCGuGGGCgCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 42626 0.67 0.763635
Target:  5'- cGGGcCGCUGGgaacacgUCAGCAgCCGCGGuGUAg -3'
miRNA:   3'- -UUCuGCGACC-------AGUCGUgGGCGCU-CGU- -5'
14592 3' -59.5 NC_003521.1 + 118593 0.67 0.755363
Target:  5'- -cGGCGCUcaGUCgccGGCACCCGCGcucGCAg -3'
miRNA:   3'- uuCUGCGAc-CAG---UCGUGGGCGCu--CGU- -5'
14592 3' -59.5 NC_003521.1 + 47382 0.67 0.755363
Target:  5'- -cGACGaagGGUCccagGGCGCUgCGCGAGCGg -3'
miRNA:   3'- uuCUGCga-CCAG----UCGUGG-GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 55960 0.68 0.746077
Target:  5'- uGGACGCUgcugugccuggGGUCGGCAgUCGC-AGCGg -3'
miRNA:   3'- uUCUGCGA-----------CCAGUCGUgGGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 137533 0.68 0.743272
Target:  5'- -cGGCGCgUGGUggccuacgacgagaCGGCGCCgGCcGAGCAg -3'
miRNA:   3'- uuCUGCG-ACCA--------------GUCGUGGgCG-CUCGU- -5'
14592 3' -59.5 NC_003521.1 + 154678 0.68 0.736698
Target:  5'- cGAGACGCUGGa-GGCuACCgCGUGuGCGa -3'
miRNA:   3'- -UUCUGCGACCagUCG-UGG-GCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 228575 0.68 0.736698
Target:  5'- cAGACGCccuUGagguuGUCGGCguGCCCGCaGAGCAu -3'
miRNA:   3'- uUCUGCG---AC-----CAGUCG--UGGGCG-CUCGU- -5'
14592 3' -59.5 NC_003521.1 + 6687 0.68 0.736698
Target:  5'- ---cUGCagGGcCuGCGCCCGCGAGCGc -3'
miRNA:   3'- uucuGCGa-CCaGuCGUGGGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 76684 0.68 0.727234
Target:  5'- gAGGACGCUGGgggaCAGCGgauuCCUGCGAa-- -3'
miRNA:   3'- -UUCUGCGACCa---GUCGU----GGGCGCUcgu -5'
14592 3' -59.5 NC_003521.1 + 36954 0.68 0.727234
Target:  5'- -cGACGCUGGUCGucGCAgCggaGCGGGUg -3'
miRNA:   3'- uuCUGCGACCAGU--CGUgGg--CGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.