miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 197484 0.66 0.903817
Target:  5'- -aCGcGCGGCGGGCCg-GAcGGCG-CGg -3'
miRNA:   3'- ggGU-CGCUGCCCGGaaCUuCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 18323 0.66 0.920096
Target:  5'- gCCCAGCGGCGuGGUgCUguUGGAccaguucGGCGUgGu -3'
miRNA:   3'- -GGGUCGCUGC-CCG-GA--ACUU-------CCGCAgC- -5'
14592 5' -58.4 NC_003521.1 + 164739 0.66 0.925804
Target:  5'- aCCAGCG-CGGGag--GggGGCaUCGc -3'
miRNA:   3'- gGGUCGCuGCCCggaaCuuCCGcAGC- -5'
14592 5' -58.4 NC_003521.1 + 1901 0.66 0.909631
Target:  5'- aCCGG-GACGGGCUUgucuucggGGAuGGCGcCGa -3'
miRNA:   3'- gGGUCgCUGCCCGGAa-------CUU-CCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 180875 0.66 0.915234
Target:  5'- uUCC-GCGcCGGGCUgUUGAucGGCGUCc -3'
miRNA:   3'- -GGGuCGCuGCCCGG-AACUu-CCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 176168 0.66 0.927816
Target:  5'- gCCCGGUGGCaGGUgguugaugagcgagUUGAcGGCGUCGa -3'
miRNA:   3'- -GGGUCGCUGcCCGg-------------AACUuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 52332 0.66 0.902032
Target:  5'- uCUCGGCGGCGgacccaggcccacGGCCUgcucguagcucgGAGGcGCGUCa -3'
miRNA:   3'- -GGGUCGCUGC-------------CCGGAa-----------CUUC-CGCAGc -5'
14592 5' -58.4 NC_003521.1 + 121909 0.67 0.871673
Target:  5'- gCCCAcGCcGCGGcGCCgacGAGGGCGagGa -3'
miRNA:   3'- -GGGU-CGcUGCC-CGGaa-CUUCCGCagC- -5'
14592 5' -58.4 NC_003521.1 + 156895 0.67 0.878501
Target:  5'- gCCCgauggcacggggGGCGACGGGCCggagcGggGGaCuUCGc -3'
miRNA:   3'- -GGG------------UCGCUGCCCGGaa---CuuCC-GcAGC- -5'
14592 5' -58.4 NC_003521.1 + 1614 0.67 0.864653
Target:  5'- aCCAGCGccugugcuGCGGGUggCUguuucuGGGCGUCGu -3'
miRNA:   3'- gGGUCGC--------UGCCCG--GAacu---UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 122610 0.67 0.869587
Target:  5'- cCCCGGCGACGGcggcggccgcgcGCUcggcggccccgacuUUGccggcGGGCGUCGu -3'
miRNA:   3'- -GGGUCGCUGCC------------CGG--------------AACu----UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 198447 0.67 0.885132
Target:  5'- gCCAcGCGAUuGGCCgucggcUGgcGGUGUCGa -3'
miRNA:   3'- gGGU-CGCUGcCCGGa-----ACuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 109400 0.67 0.878501
Target:  5'- aCCCGGUu---GGUgUUGAAGGCGUUGa -3'
miRNA:   3'- -GGGUCGcugcCCGgAACUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 121728 0.67 0.891565
Target:  5'- gCCCGGCGAgcuGCCguugGAAGGCGagGg -3'
miRNA:   3'- -GGGUCGCUgccCGGaa--CUUCCGCagC- -5'
14592 5' -58.4 NC_003521.1 + 197164 0.67 0.857447
Target:  5'- uUCC-GCGcUGGGCCUggcagggcUGGAGGCGguggCGg -3'
miRNA:   3'- -GGGuCGCuGCCCGGA--------ACUUCCGCa---GC- -5'
14592 5' -58.4 NC_003521.1 + 51767 0.67 0.891565
Target:  5'- gUCGGCGACuuuggaaGGCUUUGAAGGUGgagCa -3'
miRNA:   3'- gGGUCGCUGc------CCGGAACUUCCGCa--Gc -5'
14592 5' -58.4 NC_003521.1 + 99677 0.67 0.885132
Target:  5'- gCCCGGUGcACGGGgUUgccGAAGGUcUCGg -3'
miRNA:   3'- -GGGUCGC-UGCCCgGAa--CUUCCGcAGC- -5'
14592 5' -58.4 NC_003521.1 + 72407 0.67 0.871673
Target:  5'- aCCAGCGGCGgaGGCaCUgaggaaGAGGGCGa-- -3'
miRNA:   3'- gGGUCGCUGC--CCG-GAa-----CUUCCGCagc -5'
14592 5' -58.4 NC_003521.1 + 46440 0.67 0.864653
Target:  5'- aUCCGGCG--GGGCUgcGggGGCugGUCGg -3'
miRNA:   3'- -GGGUCGCugCCCGGaaCuuCCG--CAGC- -5'
14592 5' -58.4 NC_003521.1 + 201841 0.67 0.864653
Target:  5'- aCCAGCGccugugcuGCGGGUggCUguuucuGGGCGUCGu -3'
miRNA:   3'- gGGUCGC--------UGCCCG--GAacu---UCCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.