Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14592 | 5' | -58.4 | NC_003521.1 | + | 32419 | 0.66 | 0.897794 |
Target: 5'- gCCC-GUGGCGcacGGCCUccUGAcgguuacggauGGGCGUCa -3' miRNA: 3'- -GGGuCGCUGC---CCGGA--ACU-----------UCCGCAGc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 196254 | 0.66 | 0.909631 |
Target: 5'- aCCAGaaaGuACaGGUCgUUGAGGGCGUCc -3' miRNA: 3'- gGGUCg--C-UGcCCGG-AACUUCCGCAGc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 192058 | 0.66 | 0.915234 |
Target: 5'- aCgCGGCGuccGCGGcGgUUUGuGAGGCGUCGg -3' miRNA: 3'- -GgGUCGC---UGCC-CgGAAC-UUCCGCAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 26559 | 0.66 | 0.909631 |
Target: 5'- gCCAGCGACGGcGUC---AGGGCGaUUGu -3' miRNA: 3'- gGGUCGCUGCC-CGGaacUUCCGC-AGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 67571 | 0.66 | 0.897794 |
Target: 5'- --aGGCGGCGGGCCccGcGGGCcagaGUCGc -3' miRNA: 3'- gggUCGCUGCCCGGaaCuUCCG----CAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 117720 | 0.66 | 0.909631 |
Target: 5'- gCCCGGCGAgGacGGUC-UGGAGGUGcgCGu -3' miRNA: 3'- -GGGUCGCUgC--CCGGaACUUCCGCa-GC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 178380 | 0.66 | 0.903224 |
Target: 5'- cCCCGugcgcgcGCGGCGGGCUcagacgaggagaUUGggGuGCGUg- -3' miRNA: 3'- -GGGU-------CGCUGCCCGG------------AACuuC-CGCAgc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 52332 | 0.66 | 0.902032 |
Target: 5'- uCUCGGCGGCGgacccaggcccacGGCCUgcucguagcucgGAGGcGCGUCa -3' miRNA: 3'- -GGGUCGCUGC-------------CCGGAa-----------CUUC-CGCAGc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 34151 | 0.66 | 0.915234 |
Target: 5'- gCCCAcGCGcACGaaGGCCUUGAGGuCG-CGg -3' miRNA: 3'- -GGGU-CGC-UGC--CCGGAACUUCcGCaGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 24228 | 0.66 | 0.925804 |
Target: 5'- aCCAGCGGguUGGGCa--GcGGGCgGUCGg -3' miRNA: 3'- gGGUCGCU--GCCCGgaaCuUCCG-CAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 180875 | 0.66 | 0.915234 |
Target: 5'- uUCC-GCGcCGGGCUgUUGAucGGCGUCc -3' miRNA: 3'- -GGGuCGCuGCCCGG-AACUu-CCGCAGc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 40361 | 0.66 | 0.920626 |
Target: 5'- -aCGGCGcugcGCaGGGCCUucuccacgaUGucGGCGUCGu -3' miRNA: 3'- ggGUCGC----UG-CCCGGA---------ACuuCCGCAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 197484 | 0.66 | 0.903817 |
Target: 5'- -aCGcGCGGCGGGCCg-GAcGGCG-CGg -3' miRNA: 3'- ggGU-CGCUGCCCGGaaCUuCCGCaGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 45243 | 0.66 | 0.915234 |
Target: 5'- gCCCGGCaGACGGGCCUgacccccAAGcGCuUCc -3' miRNA: 3'- -GGGUCG-CUGCCCGGAac-----UUC-CGcAGc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 136396 | 0.66 | 0.903817 |
Target: 5'- cCUCGGCcGCGGGCCgcgUGuGAGGCa--- -3' miRNA: 3'- -GGGUCGcUGCCCGGa--AC-UUCCGcagc -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 212634 | 0.66 | 0.895327 |
Target: 5'- aCCUugGGCGACuuGGCCaugcgacccgaaGAGGGCGUCGc -3' miRNA: 3'- -GGG--UCGCUGc-CCGGaa----------CUUCCGCAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 1901 | 0.66 | 0.909631 |
Target: 5'- aCCGG-GACGGGCUUgucuucggGGAuGGCGcCGa -3' miRNA: 3'- gGGUCgCUGCCCGGAa-------CUU-CCGCaGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 18961 | 0.66 | 0.909631 |
Target: 5'- aCCCAGCGACaa--CgagGAGGGgGUCGa -3' miRNA: 3'- -GGGUCGCUGcccgGaa-CUUCCgCAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 176168 | 0.66 | 0.927816 |
Target: 5'- gCCCGGUGGCaGGUgguugaugagcgagUUGAcGGCGUCGa -3' miRNA: 3'- -GGGUCGCUGcCCGg-------------AACUuCCGCAGC- -5' |
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14592 | 5' | -58.4 | NC_003521.1 | + | 164739 | 0.66 | 0.925804 |
Target: 5'- aCCAGCG-CGGGag--GggGGCaUCGc -3' miRNA: 3'- gGGUCGCuGCCCggaaCuuCCGcAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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