miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 224015 0.71 0.693434
Target:  5'- -gCAGCGGCGGGCCc----GGCgGUCGg -3'
miRNA:   3'- ggGUCGCUGCCCGGaacuuCCG-CAGC- -5'
14592 5' -58.4 NC_003521.1 + 218721 0.73 0.558844
Target:  5'- -gCGGCGGCGGGCga-GAAgcGGCGUCGg -3'
miRNA:   3'- ggGUCGCUGCCCGgaaCUU--CCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 34443 0.72 0.597102
Target:  5'- uCCacguaGGCGcuGCGGGCC-UGggGGuCGUCGc -3'
miRNA:   3'- -GGg----UCGC--UGCCCGGaACuuCC-GCAGC- -5'
14592 5' -58.4 NC_003521.1 + 131052 0.72 0.606738
Target:  5'- -gCGGCGGCGGGCCUcUGGAcGCGguggCGg -3'
miRNA:   3'- ggGUCGCUGCCCGGA-ACUUcCGCa---GC- -5'
14592 5' -58.4 NC_003521.1 + 91944 0.72 0.606738
Target:  5'- aCCCGGCGGCGGaCCccgUGgcGGCGagGg -3'
miRNA:   3'- -GGGUCGCUGCCcGGa--ACuuCCGCagC- -5'
14592 5' -58.4 NC_003521.1 + 24345 0.72 0.616391
Target:  5'- aUCGGCGGCGGGaCC-UGAAGGUGcUGg -3'
miRNA:   3'- gGGUCGCUGCCC-GGaACUUCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 207042 0.72 0.626055
Target:  5'- gUCGGUGGCuGGGCCgcaggccGGAGGCGUUGc -3'
miRNA:   3'- gGGUCGCUG-CCCGGaa-----CUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 62784 0.72 0.635723
Target:  5'- aCCAGCcuGACGGGCCc----GGCGUCu -3'
miRNA:   3'- gGGUCG--CUGCCCGGaacuuCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 165453 0.72 0.645389
Target:  5'- --gGGUGGCaGGCCUUGAGcaccagguGGCGUCGa -3'
miRNA:   3'- gggUCGCUGcCCGGAACUU--------CCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 111181 0.73 0.539965
Target:  5'- cCCCGGCGACGGcGCCgcgGAcggugggcuGGGCGa-- -3'
miRNA:   3'- -GGGUCGCUGCC-CGGaa-CU---------UCCGCagc -5'
14592 5' -58.4 NC_003521.1 + 168437 0.73 0.539965
Target:  5'- gCCgCGGCGGCGGGCg-UGAAGaGCGUg- -3'
miRNA:   3'- -GG-GUCGCUGCCCGgaACUUC-CGCAgc -5'
14592 5' -58.4 NC_003521.1 + 188351 0.74 0.521307
Target:  5'- aCCA-CGA-GGGCCgUGAGGGCGUUGg -3'
miRNA:   3'- gGGUcGCUgCCCGGaACUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 85552 0.89 0.072133
Target:  5'- gCCCAGCGACGGGCCU--GAGGCGcCGc -3'
miRNA:   3'- -GGGUCGCUGCCCGGAacUUCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 117484 0.87 0.095129
Target:  5'- aCCCGGCGACGGGCCUguccgGcGGGGCGUaCGg -3'
miRNA:   3'- -GGGUCGCUGCCCGGAa----C-UUCCGCA-GC- -5'
14592 5' -58.4 NC_003521.1 + 98968 0.79 0.266172
Target:  5'- gCUAGCGACGGcggcGCCUUuaGGAGGCGUCa -3'
miRNA:   3'- gGGUCGCUGCC----CGGAA--CUUCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 164062 0.77 0.360534
Target:  5'- gCCaCGGCGACGGucGCCUcGGAGGuCGUCGu -3'
miRNA:   3'- -GG-GUCGCUGCC--CGGAaCUUCC-GCAGC- -5'
14592 5' -58.4 NC_003521.1 + 86185 0.77 0.37578
Target:  5'- aCCAGCGacucGCGGGCCacggUGGAGGCGaagggCGg -3'
miRNA:   3'- gGGUCGC----UGCCCGGa---ACUUCCGCa----GC- -5'
14592 5' -58.4 NC_003521.1 + 50024 0.77 0.383564
Target:  5'- uCCUguAGCGcaGCaGGGCCUuuuUGAGGGCGUCGu -3'
miRNA:   3'- -GGG--UCGC--UG-CCCGGA---ACUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 115663 0.76 0.424055
Target:  5'- cCCCAGUGGCGGGUgaaGAAGGCGgccaggCGg -3'
miRNA:   3'- -GGGUCGCUGCCCGgaaCUUCCGCa-----GC- -5'
14592 5' -58.4 NC_003521.1 + 120947 0.74 0.502904
Target:  5'- cUCCGGCGAgGGGCa--GggGGCGgggCGg -3'
miRNA:   3'- -GGGUCGCUgCCCGgaaCuuCCGCa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.