miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 1614 0.67 0.864653
Target:  5'- aCCAGCGccugugcuGCGGGUggCUguuucuGGGCGUCGu -3'
miRNA:   3'- gGGUCGC--------UGCCCG--GAacu---UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 1901 0.66 0.909631
Target:  5'- aCCGG-GACGGGCUUgucuucggGGAuGGCGcCGa -3'
miRNA:   3'- gGGUCgCUGCCCGGAa-------CUU-CCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 5836 0.68 0.826859
Target:  5'- uCCCGGCGACcgGGGCCcuuuuaugcGAuccGGGCG-CGg -3'
miRNA:   3'- -GGGUCGCUG--CCCGGaa-------CU---UCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 6410 0.68 0.850058
Target:  5'- -gCGGCGACGGGUCUUGcc-GCcUCGg -3'
miRNA:   3'- ggGUCGCUGCCCGGAACuucCGcAGC- -5'
14592 5' -58.4 NC_003521.1 + 9091 0.67 0.871673
Target:  5'- aUCCAGUGAaGGaGCC--GGAGGaCGUCGa -3'
miRNA:   3'- -GGGUCGCUgCC-CGGaaCUUCC-GCAGC- -5'
14592 5' -58.4 NC_003521.1 + 9755 0.69 0.801396
Target:  5'- -aCAGCGuaACGGGCCUagacugaUGAAGuaCGUCGg -3'
miRNA:   3'- ggGUCGC--UGCCCGGA-------ACUUCc-GCAGC- -5'
14592 5' -58.4 NC_003521.1 + 13904 0.66 0.915234
Target:  5'- gCCCGGCGcggaGgGGGCCgcGGAGGCc--- -3'
miRNA:   3'- -GGGUCGC----UgCCCGGaaCUUCCGcagc -5'
14592 5' -58.4 NC_003521.1 + 18323 0.66 0.920096
Target:  5'- gCCCAGCGGCGuGGUgCUguUGGAccaguucGGCGUgGu -3'
miRNA:   3'- -GGGUCGCUGC-CCG-GA--ACUU-------CCGCAgC- -5'
14592 5' -58.4 NC_003521.1 + 18961 0.66 0.909631
Target:  5'- aCCCAGCGACaa--CgagGAGGGgGUCGa -3'
miRNA:   3'- -GGGUCGCUGcccgGaa-CUUCCgCAGC- -5'
14592 5' -58.4 NC_003521.1 + 19735 0.69 0.767524
Target:  5'- aCCAGCGugGcGGU---GAcGGCGUCGg -3'
miRNA:   3'- gGGUCGCugC-CCGgaaCUuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 23101 0.66 0.920626
Target:  5'- gCCgGGCGGgGGGCCggGAcGGCa--- -3'
miRNA:   3'- -GGgUCGCUgCCCGGaaCUuCCGcagc -5'
14592 5' -58.4 NC_003521.1 + 24228 0.66 0.925804
Target:  5'- aCCAGCGGguUGGGCa--GcGGGCgGUCGg -3'
miRNA:   3'- gGGUCGCU--GCCCGgaaCuUCCG-CAGC- -5'
14592 5' -58.4 NC_003521.1 + 24345 0.72 0.616391
Target:  5'- aUCGGCGGCGGGaCC-UGAAGGUGcUGg -3'
miRNA:   3'- gGGUCGCUGCCC-GGaACUUCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 26559 0.66 0.909631
Target:  5'- gCCAGCGACGGcGUC---AGGGCGaUUGu -3'
miRNA:   3'- gGGUCGCUGCC-CGGaacUUCCGC-AGC- -5'
14592 5' -58.4 NC_003521.1 + 32419 0.66 0.897794
Target:  5'- gCCC-GUGGCGcacGGCCUccUGAcgguuacggauGGGCGUCa -3'
miRNA:   3'- -GGGuCGCUGC---CCGGA--ACU-----------UCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 33630 0.69 0.793747
Target:  5'- gCCCAGCaACaGGCCgUGGAGGgG-CGg -3'
miRNA:   3'- -GGGUCGcUGcCCGGaACUUCCgCaGC- -5'
14592 5' -58.4 NC_003521.1 + 34151 0.66 0.915234
Target:  5'- gCCCAcGCGcACGaaGGCCUUGAGGuCG-CGg -3'
miRNA:   3'- -GGGU-CGC-UGC--CCGGAACUUCcGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 34286 0.71 0.693434
Target:  5'- -aCGGgGGCGGGCCac--GGGCGUCa -3'
miRNA:   3'- ggGUCgCUGCCCGGaacuUCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 34386 0.68 0.834758
Target:  5'- aCCAGCaGGugguggcgcuCGGGCCaggUGAggaucagcuGGGCGUCGc -3'
miRNA:   3'- gGGUCG-CU----------GCCCGGa--ACU---------UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 34443 0.72 0.597102
Target:  5'- uCCacguaGGCGcuGCGGGCC-UGggGGuCGUCGc -3'
miRNA:   3'- -GGg----UCGC--UGCCCGGaACuuCC-GCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.