miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 91728 0.67 0.871673
Target:  5'- gCUUGGCGACGuGGUagaggcUGAGGGCGUgCGa -3'
miRNA:   3'- -GGGUCGCUGC-CCGga----ACUUCCGCA-GC- -5'
14592 5' -58.4 NC_003521.1 + 9091 0.67 0.871673
Target:  5'- aUCCAGUGAaGGaGCC--GGAGGaCGUCGa -3'
miRNA:   3'- -GGGUCGCUgCC-CGGaaCUUCC-GCAGC- -5'
14592 5' -58.4 NC_003521.1 + 72657 0.67 0.871673
Target:  5'- uUCCA-CGAUGGGCCUgGgcGGCGcCc -3'
miRNA:   3'- -GGGUcGCUGCCCGGAaCuuCCGCaGc -5'
14592 5' -58.4 NC_003521.1 + 122610 0.67 0.869587
Target:  5'- cCCCGGCGACGGcggcggccgcgcGCUcggcggccccgacuUUGccggcGGGCGUCGu -3'
miRNA:   3'- -GGGUCGCUGCC------------CGG--------------AACu----UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 167388 0.67 0.864653
Target:  5'- aUCgAGCGacGCGGGCaCgcuagUGggGGCGcuUCGg -3'
miRNA:   3'- -GGgUCGC--UGCCCG-Ga----ACuuCCGC--AGC- -5'
14592 5' -58.4 NC_003521.1 + 201841 0.67 0.864653
Target:  5'- aCCAGCGccugugcuGCGGGUggCUguuucuGGGCGUCGu -3'
miRNA:   3'- gGGUCGC--------UGCCCG--GAacu---UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 46440 0.67 0.864653
Target:  5'- aUCCGGCG--GGGCUgcGggGGCugGUCGg -3'
miRNA:   3'- -GGGUCGCugCCCGGaaCuuCCG--CAGC- -5'
14592 5' -58.4 NC_003521.1 + 1614 0.67 0.864653
Target:  5'- aCCAGCGccugugcuGCGGGUggCUguuucuGGGCGUCGu -3'
miRNA:   3'- gGGUCGC--------UGCCCG--GAacu---UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 164448 0.67 0.864653
Target:  5'- --gGGCGccGCGGGCCUgagcaUGAAgGGCGUgGa -3'
miRNA:   3'- gggUCGC--UGCCCGGA-----ACUU-CCGCAgC- -5'
14592 5' -58.4 NC_003521.1 + 95111 0.67 0.863941
Target:  5'- gCCGcGCGcgcuugaGCGuGGCCUUGAAGagcuccGCGUCGu -3'
miRNA:   3'- gGGU-CGC-------UGC-CCGGAACUUC------CGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 197164 0.67 0.857447
Target:  5'- uUCC-GCGcUGGGCCUggcagggcUGGAGGCGguggCGg -3'
miRNA:   3'- -GGGuCGCuGCCCGGA--------ACUUCCGCa---GC- -5'
14592 5' -58.4 NC_003521.1 + 178933 0.68 0.850058
Target:  5'- -aCGGCGACGaGGCUUccUGGAG-CGUCa -3'
miRNA:   3'- ggGUCGCUGC-CCGGA--ACUUCcGCAGc -5'
14592 5' -58.4 NC_003521.1 + 6410 0.68 0.850058
Target:  5'- -gCGGCGACGGGUCUUGcc-GCcUCGg -3'
miRNA:   3'- ggGUCGCUGCCCGGAACuucCGcAGC- -5'
14592 5' -58.4 NC_003521.1 + 77722 0.68 0.850058
Target:  5'- gUUGGCGACGgcGGCCUcggUGGGcGGCGUCu -3'
miRNA:   3'- gGGUCGCUGC--CCGGA---ACUU-CCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 155493 0.68 0.850058
Target:  5'- gCCuGCGGCGGGCCgcgGGccaAGGCuGgagCGa -3'
miRNA:   3'- gGGuCGCUGCCCGGaa-CU---UCCG-Ca--GC- -5'
14592 5' -58.4 NC_003521.1 + 195196 0.68 0.850058
Target:  5'- gCCGGCGGCGguGGCCgucu--GCGUCGg -3'
miRNA:   3'- gGGUCGCUGC--CCGGaacuucCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 36982 0.68 0.850058
Target:  5'- gCUCGGCGGCGacauCCgcgacGAGGGCGUCGc -3'
miRNA:   3'- -GGGUCGCUGCcc--GGaa---CUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 223804 0.68 0.84554
Target:  5'- gCCAGaCGACGGGCCUgcgccgccgccaccGcGGGCGcCu -3'
miRNA:   3'- gGGUC-GCUGCCCGGAa-------------CuUCCGCaGc -5'
14592 5' -58.4 NC_003521.1 + 109797 0.68 0.842493
Target:  5'- gCCCAGgaGACGGGaCgUggagGAGGGCGgcaCGg -3'
miRNA:   3'- -GGGUCg-CUGCCC-GgAa---CUUCCGCa--GC- -5'
14592 5' -58.4 NC_003521.1 + 109373 0.68 0.842493
Target:  5'- gUCCAGCGGCaggcaGGCCaggucgcgGAAGGCGcUCa -3'
miRNA:   3'- -GGGUCGCUGc----CCGGaa------CUUCCGC-AGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.