miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 5' -58.4 NC_003521.1 + 36982 0.68 0.850058
Target:  5'- gCUCGGCGGCGacauCCgcgacGAGGGCGUCGc -3'
miRNA:   3'- -GGGUCGCUGCcc--GGaa---CUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 37412 0.71 0.693434
Target:  5'- gCCUuguGCGAC-GGCCUgGGAGGCGUgGc -3'
miRNA:   3'- -GGGu--CGCUGcCCGGAaCUUCCGCAgC- -5'
14592 5' -58.4 NC_003521.1 + 39850 0.7 0.721772
Target:  5'- cUCCGGCGugGGGCUUgcacgUGguGGgGUUGu -3'
miRNA:   3'- -GGGUCGCugCCCGGA-----ACuuCCgCAGC- -5'
14592 5' -58.4 NC_003521.1 + 40361 0.66 0.920626
Target:  5'- -aCGGCGcugcGCaGGGCCUucuccacgaUGucGGCGUCGu -3'
miRNA:   3'- ggGUCGC----UG-CCCGGA---------ACuuCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 45216 0.73 0.585569
Target:  5'- aCCAGCuGGCGGGCCggcugcgcaaccUGGAGcuguaGCGUCGg -3'
miRNA:   3'- gGGUCG-CUGCCCGGa-----------ACUUC-----CGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 45243 0.66 0.915234
Target:  5'- gCCCGGCaGACGGGCCUgacccccAAGcGCuUCc -3'
miRNA:   3'- -GGGUCG-CUGCCCGGAac-----UUC-CGcAGc -5'
14592 5' -58.4 NC_003521.1 + 46440 0.67 0.864653
Target:  5'- aUCCGGCG--GGGCUgcGggGGCugGUCGg -3'
miRNA:   3'- -GGGUCGCugCCCGGaaCuuCCG--CAGC- -5'
14592 5' -58.4 NC_003521.1 + 47571 0.69 0.785127
Target:  5'- -aCGGCGAgCGGGCCacGguGGCgGUCGg -3'
miRNA:   3'- ggGUCGCU-GCCCGGaaCuuCCG-CAGC- -5'
14592 5' -58.4 NC_003521.1 + 49580 0.68 0.818801
Target:  5'- uCCC--CGACGaGuGCCgagGAAGGCGUCa -3'
miRNA:   3'- -GGGucGCUGC-C-CGGaa-CUUCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 50024 0.77 0.383564
Target:  5'- uCCUguAGCGcaGCaGGGCCUuuuUGAGGGCGUCGu -3'
miRNA:   3'- -GGG--UCGC--UG-CCCGGA---ACUUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 51767 0.67 0.891565
Target:  5'- gUCGGCGACuuuggaaGGCUUUGAAGGUGgagCa -3'
miRNA:   3'- gGGUCGCUGc------CCGGAACUUCCGCa--Gc -5'
14592 5' -58.4 NC_003521.1 + 52332 0.66 0.902032
Target:  5'- uCUCGGCGGCGgacccaggcccacGGCCUgcucguagcucgGAGGcGCGUCa -3'
miRNA:   3'- -GGGUCGCUGC-------------CCGGAa-----------CUUC-CGCAGc -5'
14592 5' -58.4 NC_003521.1 + 55742 0.68 0.834758
Target:  5'- uCCCAGCGcGCGGGCggcagcGAcAGGCG-CGg -3'
miRNA:   3'- -GGGUCGC-UGCCCGgaa---CU-UCCGCaGC- -5'
14592 5' -58.4 NC_003521.1 + 59622 0.7 0.758558
Target:  5'- cCCCGGCGGCGaccgcGGCUcgc-AGGCGUUGg -3'
miRNA:   3'- -GGGUCGCUGC-----CCGGaacuUCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 62784 0.72 0.635723
Target:  5'- aCCAGCcuGACGGGCCc----GGCGUCu -3'
miRNA:   3'- gGGUCG--CUGCCCGGaacuuCCGCAGc -5'
14592 5' -58.4 NC_003521.1 + 67571 0.66 0.897794
Target:  5'- --aGGCGGCGGGCCccGcGGGCcagaGUCGc -3'
miRNA:   3'- gggUCGCUGCCCGGaaCuUCCG----CAGC- -5'
14592 5' -58.4 NC_003521.1 + 70317 0.69 0.785127
Target:  5'- gCCCAGCaGCGaGGCggUGAcgccguccagcaGGGCGUUGa -3'
miRNA:   3'- -GGGUCGcUGC-CCGgaACU------------UCCGCAGC- -5'
14592 5' -58.4 NC_003521.1 + 72407 0.67 0.871673
Target:  5'- aCCAGCGGCGgaGGCaCUgaggaaGAGGGCGa-- -3'
miRNA:   3'- gGGUCGCUGC--CCG-GAa-----CUUCCGCagc -5'
14592 5' -58.4 NC_003521.1 + 72657 0.67 0.871673
Target:  5'- uUCCA-CGAUGGGCCUgGgcGGCGcCc -3'
miRNA:   3'- -GGGUcGCUGCCCGGAaCuuCCGCaGc -5'
14592 5' -58.4 NC_003521.1 + 77722 0.68 0.850058
Target:  5'- gUUGGCGACGgcGGCCUcggUGGGcGGCGUCu -3'
miRNA:   3'- gGGUCGCUGC--CCGGA---ACUU-CCGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.