miRNA display CGI


Results 41 - 60 of 168 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 5' -63.7 NC_003521.1 + 213955 0.66 0.647655
Target:  5'- -aGaCGCGGGUGG-GCgccggCUCGGGCCGu -3'
miRNA:   3'- cgC-GCGUCCGCCaCGa----GGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 109486 0.66 0.647655
Target:  5'- uGCGCGcCAGGCGcuccagcgaGUGgUCgCGccGGCCGCu -3'
miRNA:   3'- -CGCGC-GUCCGC---------CACgAGgGU--CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 225847 0.66 0.647655
Target:  5'- gGCGCGCucguGGUGGUGCgggCaCAGGUg-- -3'
miRNA:   3'- -CGCGCGu---CCGCCACGa--GgGUCCGgug -5'
14594 5' -63.7 NC_003521.1 + 181071 0.66 0.645752
Target:  5'- aGUGUGCAGGCccaguaggugacGUGCUgaUAGGCCAUg -3'
miRNA:   3'- -CGCGCGUCCGc-----------CACGAggGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 154285 0.66 0.638136
Target:  5'- uCGCGUggagcgGGGCGGcacgGCgUCCgGGGCCGa -3'
miRNA:   3'- cGCGCG------UCCGCCa---CG-AGGgUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 38168 0.66 0.638136
Target:  5'- -gGUGCAGggcgucccaGCGGggccGCUCCCAGuGCuCGCg -3'
miRNA:   3'- cgCGCGUC---------CGCCa---CGAGGGUC-CG-GUG- -5'
14594 5' -63.7 NC_003521.1 + 168545 0.66 0.638136
Target:  5'- aGCGCgGC-GGCGGcGCUggCGGGCUGCg -3'
miRNA:   3'- -CGCG-CGuCCGCCaCGAggGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 17010 0.66 0.638136
Target:  5'- cCGCGguGGCGGcgGCgcaggCCCGucgucuggcGGcCCACg -3'
miRNA:   3'- cGCGCguCCGCCa-CGa----GGGU---------CC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 53067 0.67 0.628612
Target:  5'- uCGCGCAGG-GGcGCgaaguugCgCAGGCCAUu -3'
miRNA:   3'- cGCGCGUCCgCCaCGa------GgGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 138822 0.67 0.628612
Target:  5'- gGCGCGCcugauGGCGGcgGCUacggCCUGcGGCCAg -3'
miRNA:   3'- -CGCGCGu----CCGCCa-CGA----GGGU-CCGGUg -5'
14594 5' -63.7 NC_003521.1 + 178720 0.67 0.628612
Target:  5'- cCGCGCGGGCGccgaagcGUUCCCGguuggacuGGUCGCa -3'
miRNA:   3'- cGCGCGUCCGCca-----CGAGGGU--------CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 38289 0.67 0.628612
Target:  5'- gGCGCGCA-GCaGGUGCgagagCUCGucGGCCAg -3'
miRNA:   3'- -CGCGCGUcCG-CCACGa----GGGU--CCGGUg -5'
14594 5' -63.7 NC_003521.1 + 117228 0.67 0.619091
Target:  5'- cCGCuGaCGGccGCGGcgGCUCCCGGcGCCGCc -3'
miRNA:   3'- cGCG-C-GUC--CGCCa-CGAGGGUC-CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 191379 0.67 0.619091
Target:  5'- aGCGCGCAGaCGGcGUggaggaCCAGGCuCAUg -3'
miRNA:   3'- -CGCGCGUCcGCCaCGag----GGUCCG-GUG- -5'
14594 5' -63.7 NC_003521.1 + 105630 0.67 0.619091
Target:  5'- gGCGUGCucGGGCGuGUGCgugaagCCCagcucggggguGGGCgGCa -3'
miRNA:   3'- -CGCGCG--UCCGC-CACGa-----GGG-----------UCCGgUG- -5'
14594 5' -63.7 NC_003521.1 + 24433 0.67 0.619091
Target:  5'- -gGCGCAggggccGGCGG-GCUCggaaCAGGuCCGCg -3'
miRNA:   3'- cgCGCGU------CCGCCaCGAGg---GUCC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 149635 0.67 0.609579
Target:  5'- aCGCGCccGCGGUaccGCUUCCAGaGgCGCa -3'
miRNA:   3'- cGCGCGucCGCCA---CGAGGGUC-CgGUG- -5'
14594 5' -63.7 NC_003521.1 + 129216 0.67 0.609579
Target:  5'- gGCGCGU-GGUGG-GCagUCCGGcGCCGCu -3'
miRNA:   3'- -CGCGCGuCCGCCaCGa-GGGUC-CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 138086 0.67 0.609579
Target:  5'- -gGCGCuGGCc---CUCCCAGGCCGa -3'
miRNA:   3'- cgCGCGuCCGccacGAGGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 35145 0.67 0.609579
Target:  5'- -aGCGCGGGUGcGccacGCgCCCGGGCCu- -3'
miRNA:   3'- cgCGCGUCCGC-Ca---CGaGGGUCCGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.