miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 5' -63.7 NC_003521.1 + 31869 0.69 0.462894
Target:  5'- gGCGCGguGcgaGCGGUaccGCaccgCCAGGCCGCg -3'
miRNA:   3'- -CGCGCguC---CGCCA---CGag--GGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 34339 0.66 0.647655
Target:  5'- aGCgGCGCAgGGCGGagGCcgugaggCCCAGGUCc- -3'
miRNA:   3'- -CG-CGCGU-CCGCCa-CGa------GGGUCCGGug -5'
14594 5' -63.7 NC_003521.1 + 34381 0.74 0.254263
Target:  5'- uGCGCaccaGCAGGUGGUgGCgCUCGGGCCAg -3'
miRNA:   3'- -CGCG----CGUCCGCCA-CGaGGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 34451 0.66 0.657164
Target:  5'- gGCGCuGCGGGCcugggGGUcGUcgCCgCAGGCCAg -3'
miRNA:   3'- -CGCG-CGUCCG-----CCA-CGa-GG-GUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 34982 0.69 0.507103
Target:  5'- cGgGCGCAGaaGGU-CUCCgGGGCCAg -3'
miRNA:   3'- -CgCGCGUCcgCCAcGAGGgUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 35145 0.67 0.609579
Target:  5'- -aGCGCGGGUGcGccacGCgCCCGGGCCu- -3'
miRNA:   3'- cgCGCGUCCGC-Ca---CGaGGGUCCGGug -5'
14594 5' -63.7 NC_003521.1 + 35214 0.7 0.429029
Target:  5'- gGCGCGCGGGuCGGaucgaGCgUCCuCGGGgCGCg -3'
miRNA:   3'- -CGCGCGUCC-GCCa----CG-AGG-GUCCgGUG- -5'
14594 5' -63.7 NC_003521.1 + 37467 0.74 0.259979
Target:  5'- cGCGCGCGGGCcaccguGGUGC-CgCAGGgCACc -3'
miRNA:   3'- -CGCGCGUCCG------CCACGaGgGUCCgGUG- -5'
14594 5' -63.7 NC_003521.1 + 38168 0.66 0.638136
Target:  5'- -gGUGCAGggcgucccaGCGGggccGCUCCCAGuGCuCGCg -3'
miRNA:   3'- cgCGCGUC---------CGCCa---CGAGGGUC-CG-GUG- -5'
14594 5' -63.7 NC_003521.1 + 38289 0.67 0.628612
Target:  5'- gGCGCGCA-GCaGGUGCgagagCUCGucGGCCAg -3'
miRNA:   3'- -CGCGCGUcCG-CCACGa----GGGU--CCGGUg -5'
14594 5' -63.7 NC_003521.1 + 38635 0.66 0.676122
Target:  5'- gGCGCGCcGGCugGGUGUcCCgCGGGUC-Cg -3'
miRNA:   3'- -CGCGCGuCCG--CCACGaGG-GUCCGGuG- -5'
14594 5' -63.7 NC_003521.1 + 39544 0.7 0.445782
Target:  5'- -gGCGCAGGuCGGUgGC-CCCGacgccGGCCAUc -3'
miRNA:   3'- cgCGCGUCC-GCCA-CGaGGGU-----CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 40557 0.66 0.685558
Target:  5'- -aGCGCAGcucGCGGUaGUagCCCAG-CCACa -3'
miRNA:   3'- cgCGCGUC---CGCCA-CGa-GGGUCcGGUG- -5'
14594 5' -63.7 NC_003521.1 + 43846 0.7 0.436522
Target:  5'- cGCGgGCccgucacAGGCGccccggccgGCUCCCGGGCCGu -3'
miRNA:   3'- -CGCgCG-------UCCGCca-------CGAGGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 44768 0.68 0.55301
Target:  5'- cCGCGgaAGGCGGccggUGCUggcCCUAGGCCGa -3'
miRNA:   3'- cGCGCg-UCCGCC----ACGA---GGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 45167 0.7 0.420792
Target:  5'- aCGCGUAaguGGUGGUGCgacUCCCuGGCCuCg -3'
miRNA:   3'- cGCGCGU---CCGCCACG---AGGGuCCGGuG- -5'
14594 5' -63.7 NC_003521.1 + 52585 0.68 0.56235
Target:  5'- uCGCGCGGGCagcuGGUGg-CCCgaaAGGCCGg -3'
miRNA:   3'- cGCGCGUCCG----CCACgaGGG---UCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 53067 0.67 0.628612
Target:  5'- uCGCGCAGG-GGcGCgaaguugCgCAGGCCAUu -3'
miRNA:   3'- cGCGCGUCCgCCaCGa------GgGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 55746 0.7 0.40461
Target:  5'- aGCGCGCGGGCGGcaGCga-CAGGCgCGg -3'
miRNA:   3'- -CGCGCGUCCGCCa-CGaggGUCCG-GUg -5'
14594 5' -63.7 NC_003521.1 + 56645 0.66 0.666655
Target:  5'- aGCGCaccaCGGGcCGGUGCaccUCCCgcucgcgcaccAGGUCGCa -3'
miRNA:   3'- -CGCGc---GUCC-GCCACG---AGGG-----------UCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.