miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 5' -63.7 NC_003521.1 + 966 0.72 0.309513
Target:  5'- uGgGCGCAacgagaggccGGCGGUcuGCUCCCguGGGCCGg -3'
miRNA:   3'- -CgCGCGU----------CCGCCA--CGAGGG--UCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 1623 0.67 0.590604
Target:  5'- uGUGCuGCGGGUGGcUGUUUCUGGGCguCg -3'
miRNA:   3'- -CGCG-CGUCCGCC-ACGAGGGUCCGguG- -5'
14594 5' -63.7 NC_003521.1 + 2324 0.71 0.380319
Target:  5'- uGCGCGCcGGCcuccuggGGcUGCUgacCCUGGGCCGCg -3'
miRNA:   3'- -CGCGCGuCCG-------CC-ACGA---GGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 5312 0.74 0.265799
Target:  5'- uCGCGgGGGCGGcgUGC-CCCGccGGCCGCg -3'
miRNA:   3'- cGCGCgUCCGCC--ACGaGGGU--CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 5967 0.66 0.689322
Target:  5'- aGCGUGCcguaaccgcuuccacAGGUGaacuUGCUCUC-GGCCACg -3'
miRNA:   3'- -CGCGCG---------------UCCGCc---ACGAGGGuCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 7094 0.66 0.676122
Target:  5'- cGCG-GC-GGCGGcGUccuccuUCuCCAGGCCGCu -3'
miRNA:   3'- -CGCgCGuCCGCCaCG------AG-GGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 7747 0.7 0.420792
Target:  5'- aGCgGCGgAGGCGGcgGCagUCCCAGcagacGCCGCa -3'
miRNA:   3'- -CG-CGCgUCCGCCa-CG--AGGGUC-----CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 10494 0.71 0.388827
Target:  5'- aUGCGCcGGCGGggaugGCguggcccCCCAGGCgGCg -3'
miRNA:   3'- cGCGCGuCCGCCa----CGa------GGGUCCGgUG- -5'
14594 5' -63.7 NC_003521.1 + 13169 0.71 0.378786
Target:  5'- cGCGUaCAGGCGGguccugaccaggcgUGCcgCUCGGGCCGCc -3'
miRNA:   3'- -CGCGcGUCCGCC--------------ACGa-GGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 15667 0.68 0.516163
Target:  5'- -aGCGCcgAGGUGGUGCgcgaCUGGGuCCGCa -3'
miRNA:   3'- cgCGCG--UCCGCCACGag--GGUCC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 16855 0.74 0.259979
Target:  5'- -gGCGCAGGCGGacgucuacgacgUGCguucCCCGcGGCCGCc -3'
miRNA:   3'- cgCGCGUCCGCC------------ACGa---GGGU-CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 17010 0.66 0.638136
Target:  5'- cCGCGguGGCGGcgGCgcaggCCCGucgucuggcGGcCCACg -3'
miRNA:   3'- cGCGCguCCGCCa-CGa----GGGU---------CC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 19906 0.7 0.454294
Target:  5'- gGCGUGCGGGagcggcuGGUGgUCCUGGacGCCGCa -3'
miRNA:   3'- -CGCGCGUCCg------CCACgAGGGUC--CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 23735 0.68 0.534475
Target:  5'- aUGuCGCuGGGCGGccgacUGUUCCUGGGCUACu -3'
miRNA:   3'- cGC-GCG-UCCGCC-----ACGAGGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 24433 0.67 0.619091
Target:  5'- -gGCGCAggggccGGCGG-GCUCggaaCAGGuCCGCg -3'
miRNA:   3'- cgCGCGU------CCGCCaCGAGg---GUCC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 24661 0.66 0.676122
Target:  5'- -gGCGCuGGUGGUcaccuuccuguGCgCCCAGGUgGCc -3'
miRNA:   3'- cgCGCGuCCGCCA-----------CGaGGGUCCGgUG- -5'
14594 5' -63.7 NC_003521.1 + 27111 0.73 0.271725
Target:  5'- gGCGCGCAGGcCGGUGCgggcgaacUCCaugagguugCGGGCUAUg -3'
miRNA:   3'- -CGCGCGUCC-GCCACG--------AGG---------GUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 27422 0.66 0.685558
Target:  5'- uGCGCacGUAGGCcuccagGCagCCCAGGCCGa -3'
miRNA:   3'- -CGCG--CGUCCGcca---CGa-GGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 27969 0.71 0.396668
Target:  5'- aCGC-CAGGCGGcGCUCac-GGCCACg -3'
miRNA:   3'- cGCGcGUCCGCCaCGAGgguCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 29351 0.68 0.525289
Target:  5'- aCGCGCAcuGGaCGGagUGCgaaCCCGcGGCCGCg -3'
miRNA:   3'- cGCGCGU--CC-GCC--ACGa--GGGU-CCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.