miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 5' -63.7 NC_003521.1 + 214354 1.11 0.000686
Target:  5'- aGCGCGCAGGCGGUGCUCCCAGGCCACg -3'
miRNA:   3'- -CGCGCGUCCGCCACGAGGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 92094 0.83 0.068205
Target:  5'- gGUGCGCAgGGCGGUGC-CCCGGGUCGg -3'
miRNA:   3'- -CGCGCGU-CCGCCACGaGGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 152892 0.81 0.083229
Target:  5'- uCGCGCAGcucgugcacGCGGUGCUCCCAGGUCu- -3'
miRNA:   3'- cGCGCGUC---------CGCCACGAGGGUCCGGug -5'
14594 5' -63.7 NC_003521.1 + 103133 0.76 0.180426
Target:  5'- aGCGCGC-GGCGGUGCUgcagcaCCAGGCgGa -3'
miRNA:   3'- -CGCGCGuCCGCCACGAg-----GGUCCGgUg -5'
14594 5' -63.7 NC_003521.1 + 34381 0.74 0.254263
Target:  5'- uGCGCaccaGCAGGUGGUgGCgCUCGGGCCAg -3'
miRNA:   3'- -CGCG----CGUCCGCCA-CGaGGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 16855 0.74 0.259979
Target:  5'- -gGCGCAGGCGGacgucuacgacgUGCguucCCCGcGGCCGCc -3'
miRNA:   3'- cgCGCGUCCGCC------------ACGa---GGGU-CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 37467 0.74 0.259979
Target:  5'- cGCGCGCGGGCcaccguGGUGC-CgCAGGgCACc -3'
miRNA:   3'- -CGCGCGUCCG------CCACGaGgGUCCgGUG- -5'
14594 5' -63.7 NC_003521.1 + 5312 0.74 0.265799
Target:  5'- uCGCGgGGGCGGcgUGC-CCCGccGGCCGCg -3'
miRNA:   3'- cGCGCgUCCGCC--ACGaGGGU--CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 27111 0.73 0.271725
Target:  5'- gGCGCGCAGGcCGGUGCgggcgaacUCCaugagguugCGGGCUAUg -3'
miRNA:   3'- -CGCGCGUCC-GCCACG--------AGG---------GUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 119824 0.73 0.288252
Target:  5'- gGUGCGCacgccccagugguAGGCGGUGCgucggauauccaCCCGGGCCuCg -3'
miRNA:   3'- -CGCGCG-------------UCCGCCACGa-----------GGGUCCGGuG- -5'
14594 5' -63.7 NC_003521.1 + 153448 0.73 0.296488
Target:  5'- cGCGCucGUAGGCcagcgGCUCgCAGGCCACg -3'
miRNA:   3'- -CGCG--CGUCCGcca--CGAGgGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 118927 0.72 0.309513
Target:  5'- cGCgGCGUGGGCGGcgGCgUCCCgucaGGGCCAg -3'
miRNA:   3'- -CG-CGCGUCCGCCa-CG-AGGG----UCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 966 0.72 0.309513
Target:  5'- uGgGCGCAacgagaggccGGCGGUcuGCUCCCguGGGCCGg -3'
miRNA:   3'- -CgCGCGU----------CCGCCA--CGAGGG--UCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 218395 0.72 0.316187
Target:  5'- -aGCGCGGGCGGUaCUCggCCAcGCCGCg -3'
miRNA:   3'- cgCGCGUCCGCCAcGAG--GGUcCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 126503 0.72 0.336858
Target:  5'- aGCGC-CAGGCGGcagaagCCCAGGuCCGCg -3'
miRNA:   3'- -CGCGcGUCCGCCacga--GGGUCC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 201193 0.72 0.336858
Target:  5'- uGgGCGCAacgagaggccGGCGGUcuGCUCCCgcuGGGCCGg -3'
miRNA:   3'- -CgCGCGU----------CCGCCA--CGAGGG---UCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 130357 0.72 0.343963
Target:  5'- uGCGgcCGCAGGCGccGUGCgcgCUCAGcGCCACc -3'
miRNA:   3'- -CGC--GCGUCCGC--CACGa--GGGUC-CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 134659 0.71 0.365921
Target:  5'- uCGCGCAGGaagaaGUGCU-CCAGGCCGu -3'
miRNA:   3'- cGCGCGUCCgc---CACGAgGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 150702 0.71 0.365921
Target:  5'- uGCuGCGCcGGCGGcgacugGCUCUCggccguGGGCCACg -3'
miRNA:   3'- -CG-CGCGuCCGCCa-----CGAGGG------UCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 157055 0.71 0.365921
Target:  5'- aGCGCgGCGGGgGGcGCcgccacccugUCCCAGGCCc- -3'
miRNA:   3'- -CGCG-CGUCCgCCaCG----------AGGGUCCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.