miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14594 5' -63.7 NC_003521.1 + 228982 0.66 0.666655
Target:  5'- gGUGCGCGGGCGGcGCaggaCC-GGCagCACg -3'
miRNA:   3'- -CGCGCGUCCGCCaCGag--GGuCCG--GUG- -5'
14594 5' -63.7 NC_003521.1 + 125097 0.66 0.666655
Target:  5'- -gGUGCAGGCGcUGCgggaugggCaCCAcGGCCGCc -3'
miRNA:   3'- cgCGCGUCCGCcACGa-------G-GGU-CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 238862 0.66 0.676122
Target:  5'- gGCGCGCcGGCugGGUGUcCCgCGGGUC-Cg -3'
miRNA:   3'- -CGCGCGuCCG--CCACGaGG-GUCCGGuG- -5'
14594 5' -63.7 NC_003521.1 + 225847 0.66 0.647655
Target:  5'- gGCGCGCucguGGUGGUGCgggCaCAGGUg-- -3'
miRNA:   3'- -CGCGCGu---CCGCCACGa--GgGUCCGgug -5'
14594 5' -63.7 NC_003521.1 + 69874 0.66 0.657164
Target:  5'- cCGCGCAGcGCcacg--CCCAGGCCAUa -3'
miRNA:   3'- cGCGCGUC-CGccacgaGGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 34451 0.66 0.657164
Target:  5'- gGCGCuGCGGGCcugggGGUcGUcgCCgCAGGCCAg -3'
miRNA:   3'- -CGCG-CGUCCG-----CCA-CGa-GG-GUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 34339 0.66 0.647655
Target:  5'- aGCgGCGCAgGGCGGagGCcgugaggCCCAGGUCc- -3'
miRNA:   3'- -CG-CGCGU-CCGCCa-CGa------GGGUCCGGug -5'
14594 5' -63.7 NC_003521.1 + 92509 0.66 0.689322
Target:  5'- aGCGUGCAccUGGUGCUgagcaacuuucccgaCCUGGGCUACc -3'
miRNA:   3'- -CGCGCGUccGCCACGA---------------GGGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 109486 0.66 0.647655
Target:  5'- uGCGCGcCAGGCGcuccagcgaGUGgUCgCGccGGCCGCu -3'
miRNA:   3'- -CGCGC-GUCCGC---------CACgAGgGU--CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 149182 0.66 0.653362
Target:  5'- gGCGCGCGucgccaccGGCGGccacgaggacuacGCcaCCCAGGcCCACa -3'
miRNA:   3'- -CGCGCGU--------CCGCCa------------CGa-GGGUCC-GGUG- -5'
14594 5' -63.7 NC_003521.1 + 168545 0.66 0.638136
Target:  5'- aGCGCgGC-GGCGGcGCUggCGGGCUGCg -3'
miRNA:   3'- -CGCG-CGuCCGCCaCGAggGUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 71838 0.66 0.647655
Target:  5'- -gGCGCAGcCGGUGUUCUuaagaugaagCAGGgCACg -3'
miRNA:   3'- cgCGCGUCcGCCACGAGG----------GUCCgGUG- -5'
14594 5' -63.7 NC_003521.1 + 137267 0.66 0.676122
Target:  5'- aGCGgGCAGaGCGGggGC-CCCAGcgaccuggaGCUGCg -3'
miRNA:   3'- -CGCgCGUC-CGCCa-CGaGGGUC---------CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 213955 0.66 0.647655
Target:  5'- -aGaCGCGGGUGG-GCgccggCUCGGGCCGu -3'
miRNA:   3'- cgC-GCGUCCGCCaCGa----GGGUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 151053 0.66 0.676122
Target:  5'- uGCGCGCAGGacauaCUCUCGucuucGGCCGCg -3'
miRNA:   3'- -CGCGCGUCCgccacGAGGGU-----CCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 154285 0.66 0.638136
Target:  5'- uCGCGUggagcgGGGCGGcacgGCgUCCgGGGCCGa -3'
miRNA:   3'- cGCGCG------UCCGCCa---CG-AGGgUCCGGUg -5'
14594 5' -63.7 NC_003521.1 + 129793 0.66 0.660962
Target:  5'- uGCGCGCcgAGGCcgaccgcgucaaguuGGUGCU---GGGCCGCc -3'
miRNA:   3'- -CGCGCG--UCCG---------------CCACGAgggUCCGGUG- -5'
14594 5' -63.7 NC_003521.1 + 148072 0.66 0.657164
Target:  5'- cGCGCGUcgacugguucAGGaCcGUGCucuggUCCCGGcGCCACg -3'
miRNA:   3'- -CGCGCG----------UCC-GcCACG-----AGGGUC-CGGUG- -5'
14594 5' -63.7 NC_003521.1 + 148424 0.66 0.676122
Target:  5'- -gGUGCGGGCGGccgcgccggcgGCUCCagggguGGCCGg -3'
miRNA:   3'- cgCGCGUCCGCCa----------CGAGGgu----CCGGUg -5'
14594 5' -63.7 NC_003521.1 + 147451 0.66 0.676122
Target:  5'- cGCGCGCGGaaguaGCGGaugGCgcgaCAGGCCGu -3'
miRNA:   3'- -CGCGCGUC-----CGCCa--CGagg-GUCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.