miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 28749 0.66 0.978744
Target:  5'- cAGACGCGcGcGGGCCGCGccaccgcccuaGCGcUGCa -3'
miRNA:   3'- aUCUGCGC-CuUCUGGUGC-----------UGCaACGc -5'
14595 5' -54.3 NC_003521.1 + 29867 0.73 0.773347
Target:  5'- gGGACGCaGAAGGCCGUGGCGcugUUGCa -3'
miRNA:   3'- aUCUGCGcCUUCUGGUGCUGC---AACGc -5'
14595 5' -54.3 NC_003521.1 + 31036 0.68 0.942387
Target:  5'- gUGGugGUggggggugGGAGGACCACGcUGUUGUu -3'
miRNA:   3'- -AUCugCG--------CCUUCUGGUGCuGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 31847 0.72 0.825858
Target:  5'- aGGugGCGuugaaGAAGACgGCGGCGcggUGCGa -3'
miRNA:   3'- aUCugCGC-----CUUCUGgUGCUGCa--ACGC- -5'
14595 5' -54.3 NC_003521.1 + 32139 0.67 0.976427
Target:  5'- cGGGCGCGGugcACCaaGCGGCGgaagGCGc -3'
miRNA:   3'- aUCUGCGCCuucUGG--UGCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 33967 0.72 0.800258
Target:  5'- cUGGA-GCGGAGuuCC-CGACGUUGCGg -3'
miRNA:   3'- -AUCUgCGCCUUcuGGuGCUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 34134 0.67 0.962011
Target:  5'- -cGACGgGGAGGugUACGGggcUGUUGUa -3'
miRNA:   3'- auCUGCgCCUUCugGUGCU---GCAACGc -5'
14595 5' -54.3 NC_003521.1 + 34346 0.68 0.947178
Target:  5'- cAGG-GCGGAGGccgugaggcccagguCCugGGCGUUGCGc -3'
miRNA:   3'- aUCUgCGCCUUCu--------------GGugCUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 36415 0.74 0.71552
Target:  5'- gGGGCGUGGAuuucgcggucggaGGGCCGCGGagacgaGUUGCGc -3'
miRNA:   3'- aUCUGCGCCU-------------UCUGGUGCUg-----CAACGC- -5'
14595 5' -54.3 NC_003521.1 + 36492 0.7 0.879375
Target:  5'- -cGACGCugaggGGucGACCAUGGCGUcggacUGCGg -3'
miRNA:   3'- auCUGCG-----CCuuCUGGUGCUGCA-----ACGC- -5'
14595 5' -54.3 NC_003521.1 + 36771 0.66 0.986356
Target:  5'- -cGACuGCGGcgacuggcAGGGCCACG-CGcUGCGg -3'
miRNA:   3'- auCUG-CGCC--------UUCUGGUGCuGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 37431 0.69 0.923186
Target:  5'- gAGGCGUGGccgggaccugaggcGACCGCGGCGguuucUGCGg -3'
miRNA:   3'- aUCUGCGCCuu------------CUGGUGCUGCa----ACGC- -5'
14595 5' -54.3 NC_003521.1 + 38223 0.69 0.91714
Target:  5'- gAGGCGCaGGgcGGCCuCGGCGggcgggGCGg -3'
miRNA:   3'- aUCUGCG-CCuuCUGGuGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 39455 0.7 0.892846
Target:  5'- -cGGCGCcGAGGGCCGCGuCGaaggaUUGCGg -3'
miRNA:   3'- auCUGCGcCUUCUGGUGCuGC-----AACGC- -5'
14595 5' -54.3 NC_003521.1 + 40417 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5'
14595 5' -54.3 NC_003521.1 + 43142 0.72 0.825858
Target:  5'- cUGGGCGUGGAGGugCACG-CGcugGUGg -3'
miRNA:   3'- -AUCUGCGCCUUCugGUGCuGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 44751 0.66 0.980889
Target:  5'- cUGGACGCcGAgacGGACCGCGGaag-GCGg -3'
miRNA:   3'- -AUCUGCGcCU---UCUGGUGCUgcaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 45734 0.67 0.962011
Target:  5'- gGGACGCGGGucAGGCCGgGuuuUGUaGCGc -3'
miRNA:   3'- aUCUGCGCCU--UCUGGUgCu--GCAaCGC- -5'
14595 5' -54.3 NC_003521.1 + 46026 0.7 0.905443
Target:  5'- cAGACGUGGGgaggagugaggGGcGCCAUGACGUUGgCa -3'
miRNA:   3'- aUCUGCGCCU-----------UC-UGGUGCUGCAAC-Gc -5'
14595 5' -54.3 NC_003521.1 + 46267 0.67 0.965291
Target:  5'- cGGugGCGGuagcgcagAGGugCAUGACGgaGCu -3'
miRNA:   3'- aUCugCGCC--------UUCugGUGCUGCaaCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.