miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 95 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5'
14595 5' -54.3 NC_003521.1 + 1945 0.67 0.962011
Target:  5'- aGGACGCGGAaacGGACCcGCGGgacacccagcCGgcGCGc -3'
miRNA:   3'- aUCUGCGCCU---UCUGG-UGCU----------GCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 2923 0.66 0.980889
Target:  5'- -cGACGCuGGAAGAaagcuaCCAU-ACGUUGUGg -3'
miRNA:   3'- auCUGCG-CCUUCU------GGUGcUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 4775 0.66 0.983614
Target:  5'- cAGACGCGGGuAcaucaucagcugccuGACCACGAag-UGCa -3'
miRNA:   3'- aUCUGCGCCU-U---------------CUGGUGCUgcaACGc -5'
14595 5' -54.3 NC_003521.1 + 6380 0.68 0.946754
Target:  5'- gGGuCGCGGAGGggcgccgcagcuACCGCGGCG--GCGa -3'
miRNA:   3'- aUCuGCGCCUUC------------UGGUGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 7146 0.69 0.911405
Target:  5'- --aACGCGGAGGACgACGACGa---- -3'
miRNA:   3'- aucUGCGCCUUCUGgUGCUGCaacgc -5'
14595 5' -54.3 NC_003521.1 + 7442 0.69 0.937795
Target:  5'- cGGACGCGGcgcacAGcACCACG-CGggacgUGCGa -3'
miRNA:   3'- aUCUGCGCCu----UC-UGGUGCuGCa----ACGC- -5'
14595 5' -54.3 NC_003521.1 + 9157 0.67 0.976427
Target:  5'- aAGACGC---AGACCACGGCGa-GCa -3'
miRNA:   3'- aUCUGCGccuUCUGGUGCUGCaaCGc -5'
14595 5' -54.3 NC_003521.1 + 12690 0.67 0.976427
Target:  5'- cAGuACGUGGAccacGACCGCGgguaacgcgaGCGUUGCc -3'
miRNA:   3'- aUC-UGCGCCUu---CUGGUGC----------UGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 13907 0.69 0.91714
Target:  5'- -cGGCGCGGAggGGGCCGCGGaGgccGCGc -3'
miRNA:   3'- auCUGCGCCU--UCUGGUGCUgCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 14741 0.66 0.980889
Target:  5'- uUGGGCGUgacgGGccGGCCGCGGcCGggGCGc -3'
miRNA:   3'- -AUCUGCG----CCuuCUGGUGCU-GCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 16595 0.69 0.927926
Target:  5'- -cGACaGCGGuguGGACCGCGACuacggGCGu -3'
miRNA:   3'- auCUG-CGCCu--UCUGGUGCUGcaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 17688 0.66 0.9817
Target:  5'- gUGGuucuCGCGGAGGACCacauacuggcaacgcACGugGgUGCc -3'
miRNA:   3'- -AUCu---GCGCCUUCUGG---------------UGCugCaACGc -5'
14595 5' -54.3 NC_003521.1 + 19041 0.7 0.878679
Target:  5'- cGGACGCuGGAgcuucgaGGACgGCGGCGcgGCGc -3'
miRNA:   3'- aUCUGCG-CCU-------UCUGgUGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 19101 0.69 0.927926
Target:  5'- gGGACGgGGAGGGagACGACGcgggugGCGg -3'
miRNA:   3'- aUCUGCgCCUUCUggUGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 19455 0.76 0.58713
Target:  5'- gAGGCGCGGcGGGACCAUGuCGcUGCGc -3'
miRNA:   3'- aUCUGCGCC-UUCUGGUGCuGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 23585 0.67 0.965291
Target:  5'- gUGGGCGCGGggGugCugGcC--UGCa -3'
miRNA:   3'- -AUCUGCGCCuuCugGugCuGcaACGc -5'
14595 5' -54.3 NC_003521.1 + 23835 0.69 0.911405
Target:  5'- -cGugGCGGGAGGCCGaccugcUGGCGcUGUGu -3'
miRNA:   3'- auCugCGCCUUCUGGU------GCUGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 25638 0.66 0.978744
Target:  5'- -uGGCGCGu--GACCACGACaucagGCGg -3'
miRNA:   3'- auCUGCGCcuuCUGGUGCUGcaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 27117 0.68 0.950896
Target:  5'- cAGGCcgguGCGGgcGAacuCCAUGAgGUUGCGg -3'
miRNA:   3'- aUCUG----CGCCuuCU---GGUGCUgCAACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.