miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 214683 1.07 0.009569
Target:  5'- gUAGACGCGGAAGACCACGACGUUGCGu -3'
miRNA:   3'- -AUCUGCGCCUUCUGGUGCUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 236139 0.8 0.409751
Target:  5'- gGGACGgGGggGACCgcGCGACGUcgccgGCGg -3'
miRNA:   3'- aUCUGCgCCuuCUGG--UGCUGCAa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 152069 0.79 0.426921
Target:  5'- gUGGACuucuCGGAGGACCACGGCGacgUGCGc -3'
miRNA:   3'- -AUCUGc---GCCUUCUGGUGCUGCa--ACGC- -5'
14595 5' -54.3 NC_003521.1 + 116345 0.79 0.444509
Target:  5'- -uGACGCGGAcGGACCGCGAgCGcgGCGg -3'
miRNA:   3'- auCUGCGCCU-UCUGGUGCU-GCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 117899 0.78 0.490173
Target:  5'- cGGGCGCGGAaaaagcucaAGaACCACGGCGgUGCGc -3'
miRNA:   3'- aUCUGCGCCU---------UC-UGGUGCUGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 85529 0.78 0.490173
Target:  5'- aGGACGCcGAAGcCCAUGGCGUUGCc -3'
miRNA:   3'- aUCUGCGcCUUCuGGUGCUGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 155249 0.78 0.509046
Target:  5'- gUGGugGUGGggGGCgGCGGCGgcgGCGc -3'
miRNA:   3'- -AUCugCGCCuuCUGgUGCUGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 98243 0.78 0.509046
Target:  5'- gAGGCGgGGgcGGCCACGGCGggcacgGCGa -3'
miRNA:   3'- aUCUGCgCCuuCUGGUGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 124443 0.78 0.518597
Target:  5'- gAGACGUGGuuGGGCCGCGGCGgcacGCGu -3'
miRNA:   3'- aUCUGCGCCu-UCUGGUGCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 205000 0.77 0.547651
Target:  5'- -cGAUGCGGGAGACCcgcuaacgACGGCGUgccGCGa -3'
miRNA:   3'- auCUGCGCCUUCUGG--------UGCUGCAa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 49617 0.77 0.557452
Target:  5'- gGGACGCGGAGGACacgGCGACGagGaCGa -3'
miRNA:   3'- aUCUGCGCCUUCUGg--UGCUGCaaC-GC- -5'
14595 5' -54.3 NC_003521.1 + 104095 0.77 0.557452
Target:  5'- aGGACGCGGAAGGCgGCG-CGcUGCc -3'
miRNA:   3'- aUCUGCGCCUUCUGgUGCuGCaACGc -5'
14595 5' -54.3 NC_003521.1 + 103079 0.77 0.571256
Target:  5'- cAGACGUGGAuccaggacauuuuucGGACCACGugGcagGCGa -3'
miRNA:   3'- aUCUGCGCCU---------------UCUGGUGCugCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 168077 0.76 0.577198
Target:  5'- gAGACGCGGggGGCUGCaGAgGUcgGCGa -3'
miRNA:   3'- aUCUGCGCCuuCUGGUG-CUgCAa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 104172 0.76 0.577198
Target:  5'- -cGGCGCGGGu--CgCACGGCGUUGCGg -3'
miRNA:   3'- auCUGCGCCUucuG-GUGCUGCAACGC- -5'
14595 5' -54.3 NC_003521.1 + 19455 0.76 0.58713
Target:  5'- gAGGCGCGGcGGGACCAUGuCGcUGCGc -3'
miRNA:   3'- aUCUGCGCC-UUCUGGUGCuGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 98318 0.76 0.58713
Target:  5'- gUGGugGCGGc-GGCCACGACGguggUUGCGc -3'
miRNA:   3'- -AUCugCGCCuuCUGGUGCUGC----AACGC- -5'
14595 5' -54.3 NC_003521.1 + 166761 0.76 0.607082
Target:  5'- cUGGAUGCGGucGACCAucuUGACGUUGUu -3'
miRNA:   3'- -AUCUGCGCCuuCUGGU---GCUGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 168507 0.76 0.607082
Target:  5'- cGGAgGCGGAGGACgGCGACGccaGCa -3'
miRNA:   3'- aUCUgCGCCUUCUGgUGCUGCaa-CGc -5'
14595 5' -54.3 NC_003521.1 + 84758 0.76 0.617088
Target:  5'- cGGGCGCGGc-GGCgGCGACGUUGUu -3'
miRNA:   3'- aUCUGCGCCuuCUGgUGCUGCAACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.