Results 1 - 20 of 204 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 240644 | 0.66 | 0.982867 |
Target: 5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3' miRNA: 3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 238380 | 0.66 | 0.982867 |
Target: 5'- gGGGCGCGGGGaugaacGugCAgGGCGUcccaGCGg -3' miRNA: 3'- aUCUGCGCCUU------CugGUgCUGCAa---CGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 166926 | 0.66 | 0.978744 |
Target: 5'- gUAGACGgGGc---CCACGGCcUUGCGg -3' miRNA: 3'- -AUCUGCgCCuucuGGUGCUGcAACGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 97518 | 0.66 | 0.980889 |
Target: 5'- ---cCGCGGgcGACCacggagagagACGACGgcGCGa -3' miRNA: 3'- aucuGCGCCuuCUGG----------UGCUGCaaCGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 76061 | 0.66 | 0.984687 |
Target: 5'- cAGACGCuuGAuGACgGCGAUGU-GCGg -3' miRNA: 3'- aUCUGCGc-CUuCUGgUGCUGCAaCGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 95 | 0.66 | 0.982867 |
Target: 5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3' miRNA: 3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 163269 | 0.66 | 0.978744 |
Target: 5'- -uGACGCcggucucgucGGAAGAaaCCACGuccaGUUGCGa -3' miRNA: 3'- auCUGCG----------CCUUCU--GGUGCug--CAACGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 196885 | 0.66 | 0.984687 |
Target: 5'- ---cCGCGGGugAGGCCGgGGCGgaagGCGg -3' miRNA: 3'- aucuGCGCCU--UCUGGUgCUGCaa--CGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 132588 | 0.66 | 0.980889 |
Target: 5'- aAGAUGaUGGAAG-CgGCGGCGUcgGCGu -3' miRNA: 3'- aUCUGC-GCCUUCuGgUGCUGCAa-CGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 156173 | 0.66 | 0.980889 |
Target: 5'- -cGAgGCGGAGGAgacCCACGACauccccUGCa -3' miRNA: 3'- auCUgCGCCUUCU---GGUGCUGca----ACGc -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 110806 | 0.66 | 0.986356 |
Target: 5'- -uGACGCuGAAaGCCAgCGGCcGUUGCGc -3' miRNA: 3'- auCUGCGcCUUcUGGU-GCUG-CAACGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 17688 | 0.66 | 0.9817 |
Target: 5'- gUGGuucuCGCGGAGGACCacauacuggcaacgcACGugGgUGCc -3' miRNA: 3'- -AUCu---GCGCCUUCUGG---------------UGCugCaACGc -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 83750 | 0.66 | 0.984687 |
Target: 5'- ---cCGCGGggGGCCugGGacaGggugGCGg -3' miRNA: 3'- aucuGCGCCuuCUGGugCUg--Caa--CGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 146797 | 0.66 | 0.986356 |
Target: 5'- cGGACGauGAuccGGACCugGACGacgaGCGc -3' miRNA: 3'- aUCUGCgcCU---UCUGGugCUGCaa--CGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 28749 | 0.66 | 0.978744 |
Target: 5'- cAGACGCGcGcGGGCCGCGccaccgcccuaGCGcUGCa -3' miRNA: 3'- aUCUGCGC-CuUCUGGUGC-----------UGCaACGc -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 93599 | 0.66 | 0.982867 |
Target: 5'- gAGaACGCuGAGGACC-CGGCuGggGCGa -3' miRNA: 3'- aUC-UGCGcCUUCUGGuGCUG-CaaCGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 128809 | 0.66 | 0.986983 |
Target: 5'- cAGGCGCGuGAGGAaCUugACGAUGUagucgcggucuuuggUGCGg -3' miRNA: 3'- aUCUGCGC-CUUCU-GG--UGCUGCA---------------ACGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 117730 | 0.66 | 0.978744 |
Target: 5'- -cGACGUGGGAGcgguACCcuuACGACGgaGCu -3' miRNA: 3'- auCUGCGCCUUC----UGG---UGCUGCaaCGc -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 25638 | 0.66 | 0.978744 |
Target: 5'- -uGGCGCGu--GACCACGACaucagGCGg -3' miRNA: 3'- auCUGCGCcuuCUGGUGCUGcaa--CGC- -5' |
|||||||
14595 | 5' | -54.3 | NC_003521.1 | + | 127500 | 0.66 | 0.978744 |
Target: 5'- cAGuCGCaGGAuGGCCACcAgGUUGCGg -3' miRNA: 3'- aUCuGCG-CCUuCUGGUGcUgCAACGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home