miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 131066 0.71 0.84994
Target:  5'- cUGGACGCGGuggcggcGACCGCGGCucgcGCGg -3'
miRNA:   3'- -AUCUGCGCCuu-----CUGGUGCUGcaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 134083 0.73 0.773347
Target:  5'- cUGGACGCGGAgguguccauccaGGACCugGugGccguccUGCGc -3'
miRNA:   3'- -AUCUGCGCCU------------UCUGGugCugCa-----ACGC- -5'
14595 5' -54.3 NC_003521.1 + 107667 0.72 0.808948
Target:  5'- gGGACGCGGAAcauauuacGGCuCAUGGCGUUGg- -3'
miRNA:   3'- aUCUGCGCCUU--------CUG-GUGCUGCAACgc -5'
14595 5' -54.3 NC_003521.1 + 60694 0.72 0.817483
Target:  5'- --cGCGCGGggGACCcgGgGGCGgcGCGg -3'
miRNA:   3'- aucUGCGCCuuCUGG--UgCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 168994 0.72 0.817483
Target:  5'- cGGuCGCGGGAGGCgGgCGACGggGCc -3'
miRNA:   3'- aUCuGCGCCUUCUGgU-GCUGCaaCGc -5'
14595 5' -54.3 NC_003521.1 + 43142 0.72 0.825858
Target:  5'- cUGGGCGUGGAGGugCACG-CGcugGUGg -3'
miRNA:   3'- -AUCUGCGCCUUCugGUGCuGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 31847 0.72 0.825858
Target:  5'- aGGugGCGuugaaGAAGACgGCGGCGcggUGCGa -3'
miRNA:   3'- aUCugCGC-----CUUCUGgUGCUGCa--ACGC- -5'
14595 5' -54.3 NC_003521.1 + 214489 0.71 0.842093
Target:  5'- gUAGAgGCcuAAGACCAgGGCGUUGCu -3'
miRNA:   3'- -AUCUgCGccUUCUGGUgCUGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 226883 0.71 0.842093
Target:  5'- aGGGCagcuGCGGggGcACCACGGCGgccagcGCGg -3'
miRNA:   3'- aUCUG----CGCCuuC-UGGUGCUGCaa----CGC- -5'
14595 5' -54.3 NC_003521.1 + 154679 0.73 0.764123
Target:  5'- gAGACGCuGGAGGCUACcGCGUgUGCGa -3'
miRNA:   3'- aUCUGCGcCUUCUGGUGcUGCA-ACGC- -5'
14595 5' -54.3 NC_003521.1 + 101513 0.73 0.745348
Target:  5'- cAGACGCGGccGACCAgcaGGCGcUGCa -3'
miRNA:   3'- aUCUGCGCCuuCUGGUg--CUGCaACGc -5'
14595 5' -54.3 NC_003521.1 + 150641 0.74 0.735814
Target:  5'- cAGGCGgGGgcGugCGCGACGaagGCGg -3'
miRNA:   3'- aUCUGCgCCuuCugGUGCUGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 85529 0.78 0.490173
Target:  5'- aGGACGCcGAAGcCCAUGGCGUUGCc -3'
miRNA:   3'- aUCUGCGcCUUCuGGUGCUGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 117899 0.78 0.490173
Target:  5'- cGGGCGCGGAaaaagcucaAGaACCACGGCGgUGCGc -3'
miRNA:   3'- aUCUGCGCCU---------UC-UGGUGCUGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 124443 0.78 0.518597
Target:  5'- gAGACGUGGuuGGGCCGCGGCGgcacGCGu -3'
miRNA:   3'- aUCUGCGCCu-UCUGGUGCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 168507 0.76 0.607082
Target:  5'- cGGAgGCGGAGGACgGCGACGccaGCa -3'
miRNA:   3'- aUCUgCGCCUUCUGgUGCUGCaa-CGc -5'
14595 5' -54.3 NC_003521.1 + 91860 0.75 0.677094
Target:  5'- aGGGCgGCGGAccaGGACgGCGGCGgcggUGCGa -3'
miRNA:   3'- aUCUG-CGCCU---UCUGgUGCUGCa---ACGC- -5'
14595 5' -54.3 NC_003521.1 + 129889 0.75 0.677094
Target:  5'- gGGAgGaGGAGGACgACGACGggGCGg -3'
miRNA:   3'- aUCUgCgCCUUCUGgUGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 168422 0.74 0.687018
Target:  5'- aGGGCggGCGGcAGGGCCGCGGCGgcggGCGu -3'
miRNA:   3'- aUCUG--CGCC-UUCUGGUGCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 219726 0.74 0.716494
Target:  5'- --uGCGCGGAgGGACCGCGcCGUcGCGg -3'
miRNA:   3'- aucUGCGCCU-UCUGGUGCuGCAaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.