miRNA display CGI


Results 21 - 40 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 98218 0.72 0.676603
Target:  5'- gGCgGGCAGcGGCguGGgAGGCGGggAGGc -3'
miRNA:   3'- -CG-CUGUC-CCGguCCgUCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 36774 0.72 0.686348
Target:  5'- cGCG-CGuGGCCuGGCGGGCGuggAGGa -3'
miRNA:   3'- -CGCuGUcCCGGuCCGUCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 126135 0.71 0.705705
Target:  5'- cGCGACccacguAGGGCCAGGC-GGCGu----- -3'
miRNA:   3'- -CGCUG------UCCCGGUCCGuCCGCuaaucc -5'
14596 5' -57 NC_003521.1 + 167187 0.71 0.708591
Target:  5'- cGCGGCGGaGGCCuucugcuugggcuGGCAGGCGcgccgcaucuuggugUAGGg -3'
miRNA:   3'- -CGCUGUC-CCGGu------------CCGUCCGCua-------------AUCC- -5'
14596 5' -57 NC_003521.1 + 172464 0.71 0.714345
Target:  5'- -aGGCAGGGCC-GGCAgcggugcgccgucGGCGGgaUAGGa -3'
miRNA:   3'- cgCUGUCCCGGuCCGU-------------CCGCUa-AUCC- -5'
14596 5' -57 NC_003521.1 + 76223 0.71 0.715302
Target:  5'- aGUGGCGGcGGCCGguGGCGuGGCGGUUAc- -3'
miRNA:   3'- -CGCUGUC-CCGGU--CCGU-CCGCUAAUcc -5'
14596 5' -57 NC_003521.1 + 156911 0.71 0.724833
Target:  5'- gGCGAC-GGGCCGGaGCGGGgGAc---- -3'
miRNA:   3'- -CGCUGuCCCGGUC-CGUCCgCUaaucc -5'
14596 5' -57 NC_003521.1 + 238453 0.71 0.743665
Target:  5'- gGCG-CAGGGCgGccucGGCGGGCGGggcGGa -3'
miRNA:   3'- -CGCuGUCCCGgU----CCGUCCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 38225 0.71 0.743666
Target:  5'- gGCG-CAGGGCgGccucGGCGGGCGGggcGGa -3'
miRNA:   3'- -CGCuGUCCCGgU----CCGUCCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 109439 0.71 0.750175
Target:  5'- -aGACAGGGCCguGGGCacggucucggguauGGGCGcgUcuGGGa -3'
miRNA:   3'- cgCUGUCCCGG--UCCG--------------UCCGCuaA--UCC- -5'
14596 5' -57 NC_003521.1 + 129126 0.71 0.75295
Target:  5'- cGCG-CAGGuacGUCAGGCAGGCGGc---- -3'
miRNA:   3'- -CGCuGUCC---CGGUCCGUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 180855 0.71 0.75295
Target:  5'- aGCcGC-GGGUCAGGCGGGCGuuguGGc -3'
miRNA:   3'- -CGcUGuCCCGGUCCGUCCGCuaauCC- -5'
14596 5' -57 NC_003521.1 + 122515 0.71 0.75295
Target:  5'- cGCGGCGGcGGgCAGGCcGGCGGcggUGGu -3'
miRNA:   3'- -CGCUGUC-CCgGUCCGuCCGCUa--AUCc -5'
14596 5' -57 NC_003521.1 + 148488 0.71 0.75295
Target:  5'- gGUucCGGGaGCgAGGCGGGCGGaUGGGa -3'
miRNA:   3'- -CGcuGUCC-CGgUCCGUCCGCUaAUCC- -5'
14596 5' -57 NC_003521.1 + 36344 0.7 0.762137
Target:  5'- uGCGACuuuaGGGGCuCGGGCuGGCGu---GGc -3'
miRNA:   3'- -CGCUG----UCCCG-GUCCGuCCGCuaauCC- -5'
14596 5' -57 NC_003521.1 + 110439 0.7 0.76305
Target:  5'- aGCGGCgguuguuggugcccAGGGggaggaauuccugcuCCAGGCAGGgGAUcAGGg -3'
miRNA:   3'- -CGCUG--------------UCCC---------------GGUCCGUCCgCUAaUCC- -5'
14596 5' -57 NC_003521.1 + 113358 0.7 0.771217
Target:  5'- gGgGAC-GGGCCGGG--GGCGAggAGGa -3'
miRNA:   3'- -CgCUGuCCCGGUCCguCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 69710 0.7 0.783736
Target:  5'- gGUGGCGGcGGCCcugagguacgcgguaAcGGCGGGCGGggAGGc -3'
miRNA:   3'- -CGCUGUC-CCGG---------------U-CCGUCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 168547 0.7 0.789026
Target:  5'- cGCGGCGGcGGCgCuGGCGGGCugcgGGUaAGGu -3'
miRNA:   3'- -CGCUGUC-CCG-GuCCGUCCG----CUAaUCC- -5'
14596 5' -57 NC_003521.1 + 151609 0.7 0.789026
Target:  5'- uUGGgAGGGCCcGGCAGGU---UGGGg -3'
miRNA:   3'- cGCUgUCCCGGuCCGUCCGcuaAUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.