Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14596 | 5' | -57 | NC_003521.1 | + | 215048 | 1.12 | 0.002404 |
Target: 5'- uGCGACAGGGCCAGGCAGGCGAUUAGGa -3' miRNA: 3'- -CGCUGUCCCGGUCCGUCCGCUAAUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 70232 | 0.86 | 0.130813 |
Target: 5'- cGCGcaGCAGGGCUAGGCAgGGCGAgcuggUGGGg -3' miRNA: 3'- -CGC--UGUCCCGGUCCGU-CCGCUa----AUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 168428 | 0.81 | 0.260096 |
Target: 5'- gGCGGCAGGGCCGcggcGGCGGGCGugaagagcgugaUGGGg -3' miRNA: 3'- -CGCUGUCCCGGU----CCGUCCGCua----------AUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 126424 | 0.77 | 0.413678 |
Target: 5'- cGCGAUGGcGGCCAGGCGGuCGAggaugAGGa -3' miRNA: 3'- -CGCUGUC-CCGGUCCGUCcGCUaa---UCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 177788 | 0.77 | 0.430627 |
Target: 5'- cCGACGGGGCCuguccgcuGGUGGGCGucgUGGGc -3' miRNA: 3'- cGCUGUCCCGGu-------CCGUCCGCua-AUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 49047 | 0.75 | 0.502209 |
Target: 5'- aCGGCAaGGUCGGGCAGGCGAcc-GGa -3' miRNA: 3'- cGCUGUcCCGGUCCGUCCGCUaauCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 86188 | 0.75 | 0.530387 |
Target: 5'- aGCGACucgcGGGCCAcGGUggAGGCGA--AGGg -3' miRNA: 3'- -CGCUGu---CCCGGU-CCG--UCCGCUaaUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 205213 | 0.74 | 0.539909 |
Target: 5'- cCGucCAGGGCC-GGCAGGCgGAUcAGGg -3' miRNA: 3'- cGCu-GUCCCGGuCCGUCCG-CUAaUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 77725 | 0.74 | 0.548528 |
Target: 5'- gGCGACGGcGGCCucGGUGGGCGGcgucugguaguggUUGGGc -3' miRNA: 3'- -CGCUGUC-CCGGu-CCGUCCGCU-------------AAUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 30891 | 0.74 | 0.549489 |
Target: 5'- cCGAgAGGGCCGagcugaacugcGGCAGGCGAgagcgguccUGGGg -3' miRNA: 3'- cGCUgUCCCGGU-----------CCGUCCGCUa--------AUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 133211 | 0.74 | 0.559121 |
Target: 5'- cGCGGuCGGGGCgCGGGUucagGGGCGAUggcggucgAGGa -3' miRNA: 3'- -CGCU-GUCCCG-GUCCG----UCCGCUAa-------UCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 177977 | 0.74 | 0.588274 |
Target: 5'- -aGGCGGGGCacaccugGGGCGGuGCGggUAGGg -3' miRNA: 3'- cgCUGUCCCGg------UCCGUC-CGCuaAUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 103059 | 0.73 | 0.598058 |
Target: 5'- uGCaGACAGGGCgGGugcGCGGGCGA--GGGc -3' miRNA: 3'- -CG-CUGUCCCGgUC---CGUCCGCUaaUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 151312 | 0.73 | 0.607866 |
Target: 5'- cGCGcaaGGcGGCCAGGCGGGUGGcguccgAGGg -3' miRNA: 3'- -CGCug-UC-CCGGUCCGUCCGCUaa----UCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 103672 | 0.73 | 0.607866 |
Target: 5'- uGCGGCcGcGGCCAuGGCGGGCGAg---- -3' miRNA: 3'- -CGCUGuC-CCGGU-CCGUCCGCUaaucc -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 127914 | 0.73 | 0.607866 |
Target: 5'- cGUGACGGGGCCcucccAGGC-GGCGAUc--- -3' miRNA: 3'- -CGCUGUCCCGG-----UCCGuCCGCUAaucc -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 52234 | 0.73 | 0.61769 |
Target: 5'- gGCGGC-GGGCUAcaguugggcagcGGCAGGCGGUUGu- -3' miRNA: 3'- -CGCUGuCCCGGU------------CCGUCCGCUAAUcc -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 109377 | 0.73 | 0.627525 |
Target: 5'- aGCGGCAGgcaGGCCAGGUcgcggaAGGCGcucAGGg -3' miRNA: 3'- -CGCUGUC---CCGGUCCG------UCCGCuaaUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 120936 | 0.72 | 0.647196 |
Target: 5'- cGCGGCGGcGGCUccggcgagGGGCAGGgGGcgGGGc -3' miRNA: 3'- -CGCUGUC-CCGG--------UCCGUCCgCUaaUCC- -5' |
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14596 | 5' | -57 | NC_003521.1 | + | 224011 | 0.72 | 0.666824 |
Target: 5'- uGCGGCAGcGG-CGGGCccGGCGGUcGGGg -3' miRNA: 3'- -CGCUGUC-CCgGUCCGu-CCGCUAaUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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