miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 34396 0.66 0.939334
Target:  5'- gGUGGCGcucGGGCCAGGUgaggaucagcuGGGCGucgcGGu -3'
miRNA:   3'- -CGCUGU---CCCGGUCCG-----------UCCGCuaauCC- -5'
14596 5' -57 NC_003521.1 + 102336 0.66 0.943772
Target:  5'- cGCGugGGcgccgacGCCGGGguGGCGGc-AGGc -3'
miRNA:   3'- -CGCugUCc------CGGUCCguCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 50030 0.66 0.929802
Target:  5'- aGCGcaGCAGGGCCuuuuugaGGGCGucgUAGGc -3'
miRNA:   3'- -CGC--UGUCCCGGuccg---UCCGCua-AUCC- -5'
14596 5' -57 NC_003521.1 + 117924 0.66 0.939334
Target:  5'- aCGGCGGuGCgCAGGaCGGGgGAggAGGa -3'
miRNA:   3'- cGCUGUCcCG-GUCC-GUCCgCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 67835 0.66 0.934678
Target:  5'- aGCGGCAGGaacGCgAgaagaacgacacGGCA-GCGGUUGGGg -3'
miRNA:   3'- -CGCUGUCC---CGgU------------CCGUcCGCUAAUCC- -5'
14596 5' -57 NC_003521.1 + 118686 0.66 0.938879
Target:  5'- gGCGGCGGuaccgcugguggaGGgCAGGCucauGGGCGA--GGGg -3'
miRNA:   3'- -CGCUGUC-------------CCgGUCCG----UCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 128511 0.66 0.934678
Target:  5'- uGCGACAGcgagucGCUGGGCAGGUGcggcuGGc -3'
miRNA:   3'- -CGCUGUCc-----CGGUCCGUCCGCuaau-CC- -5'
14596 5' -57 NC_003521.1 + 98430 0.66 0.943772
Target:  5'- gGUGGCGGGG-CGGGCGuacGGUGAgacgacgcagAGGa -3'
miRNA:   3'- -CGCUGUCCCgGUCCGU---CCGCUaa--------UCC- -5'
14596 5' -57 NC_003521.1 + 101975 0.66 0.934678
Target:  5'- -aGAUGGGGuCCA-GCAGGCGGUg--- -3'
miRNA:   3'- cgCUGUCCC-GGUcCGUCCGCUAaucc -5'
14596 5' -57 NC_003521.1 + 169009 0.66 0.929802
Target:  5'- gGCGACGGGGCC-GGCA--CGAUc--- -3'
miRNA:   3'- -CGCUGUCCCGGuCCGUccGCUAaucc -5'
14596 5' -57 NC_003521.1 + 174222 0.66 0.947992
Target:  5'- cGCG-C-GGGUCGGGCagGGGCGcgUcGGa -3'
miRNA:   3'- -CGCuGuCCCGGUCCG--UCCGCuaAuCC- -5'
14596 5' -57 NC_003521.1 + 67265 0.66 0.939334
Target:  5'- cGUGGCAGGa--GGGCGGGCaGggAGGa -3'
miRNA:   3'- -CGCUGUCCcggUCCGUCCGcUaaUCC- -5'
14596 5' -57 NC_003521.1 + 119903 0.66 0.943772
Target:  5'- cGCGGguGGGCCuGGaaCAGGUGGa---- -3'
miRNA:   3'- -CGCUguCCCGGuCC--GUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 101726 0.66 0.942463
Target:  5'- cGCGGCGGGGgCGagauggggaaggccGGCAGGUcGUgcGGc -3'
miRNA:   3'- -CGCUGUCCCgGU--------------CCGUCCGcUAauCC- -5'
14596 5' -57 NC_003521.1 + 92005 0.66 0.929802
Target:  5'- aGCGGgAGcGGCgAGGCGcGGCGGcggcggcggUGGGu -3'
miRNA:   3'- -CGCUgUC-CCGgUCCGU-CCGCUa--------AUCC- -5'
14596 5' -57 NC_003521.1 + 87773 0.66 0.943772
Target:  5'- gGCGcaggcCAGGGCCAGGUgcugAGGCccgUAGc -3'
miRNA:   3'- -CGCu----GUCCCGGUCCG----UCCGcuaAUCc -5'
14596 5' -57 NC_003521.1 + 209554 0.66 0.943772
Target:  5'- cCGGCGGGGUgGcGGCGacGGUGGcgGGGg -3'
miRNA:   3'- cGCUGUCCCGgU-CCGU--CCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 87870 0.66 0.943772
Target:  5'- cGCaGGCGcuGGCCAGGCcguuGGCGAaguGGa -3'
miRNA:   3'- -CG-CUGUc-CCGGUCCGu---CCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 119036 0.66 0.943772
Target:  5'- -gGAUAGGG-CGGGC-GGCGucgGGGu -3'
miRNA:   3'- cgCUGUCCCgGUCCGuCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 214979 0.66 0.934678
Target:  5'- uUGGCGGcGGCCAGGgGGGUGcg-AGc -3'
miRNA:   3'- cGCUGUC-CCGGUCCgUCCGCuaaUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.