miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 7972 0.67 0.913848
Target:  5'- cGCGGCcgggAGGGuCCGcGGC-GGCGGgggAGGu -3'
miRNA:   3'- -CGCUG----UCCC-GGU-CCGuCCGCUaa-UCC- -5'
14596 5' -57 NC_003521.1 + 10499 0.67 0.924182
Target:  5'- cCGGCGGGGauggcguggccccCCAGGCGGcGCGAc---- -3'
miRNA:   3'- cGCUGUCCC-------------GGUCCGUC-CGCUaaucc -5'
14596 5' -57 NC_003521.1 + 15313 0.69 0.839079
Target:  5'- cGCGACGGcGCCGaGCGGGUGAUcAGc -3'
miRNA:   3'- -CGCUGUCcCGGUcCGUCCGCUAaUCc -5'
14596 5' -57 NC_003521.1 + 19694 0.69 0.823016
Target:  5'- cUGACAGG-CCAGGCcgggacaaGGGCGAUgAGa -3'
miRNA:   3'- cGCUGUCCcGGUCCG--------UCCGCUAaUCc -5'
14596 5' -57 NC_003521.1 + 19956 0.68 0.86907
Target:  5'- gGUGAgGuGGCCGGGCuGGCGGUg--- -3'
miRNA:   3'- -CGCUgUcCCGGUCCGuCCGCUAaucc -5'
14596 5' -57 NC_003521.1 + 23091 0.69 0.814741
Target:  5'- uGCGuCcGuGGCCGGGCGGGgGGccGGGa -3'
miRNA:   3'- -CGCuGuC-CCGGUCCGUCCgCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 27106 0.69 0.846852
Target:  5'- uCGACGGcgcgcaGGCCGGuGCGGGCGAacuccaugAGGu -3'
miRNA:   3'- cGCUGUC------CCGGUC-CGUCCGCUaa------UCC- -5'
14596 5' -57 NC_003521.1 + 30891 0.74 0.549489
Target:  5'- cCGAgAGGGCCGagcugaacugcGGCAGGCGAgagcgguccUGGGg -3'
miRNA:   3'- cGCUgUCCCGGU-----------CCGUCCGCUa--------AUCC- -5'
14596 5' -57 NC_003521.1 + 31607 0.69 0.823017
Target:  5'- uCGGCAGGGUCAgcuGGCAGGgccaccgcggcCGAcggUGGGg -3'
miRNA:   3'- cGCUGUCCCGGU---CCGUCC-----------GCUa--AUCC- -5'
14596 5' -57 NC_003521.1 + 32365 0.67 0.913848
Target:  5'- cGgGACGGGGCUuuuGguGGCGcgUGGc -3'
miRNA:   3'- -CgCUGUCCCGGuc-CguCCGCuaAUCc -5'
14596 5' -57 NC_003521.1 + 32696 0.67 0.902114
Target:  5'- gGCGccACGGGGCUaauauagcuaGGGUGGGgGGUUGGc -3'
miRNA:   3'- -CGC--UGUCCCGG----------UCCGUCCgCUAAUCc -5'
14596 5' -57 NC_003521.1 + 34137 0.68 0.861854
Target:  5'- aUGAgCAGGGCCAGGCccacgcgcacgaAGGCcuugAGGu -3'
miRNA:   3'- cGCU-GUCCCGGUCCG------------UCCGcuaaUCC- -5'
14596 5' -57 NC_003521.1 + 34396 0.66 0.939334
Target:  5'- gGUGGCGcucGGGCCAGGUgaggaucagcuGGGCGucgcGGu -3'
miRNA:   3'- -CGCUGU---CCCGGUCCG-----------UCCGCuaauCC- -5'
14596 5' -57 NC_003521.1 + 36344 0.7 0.762137
Target:  5'- uGCGACuuuaGGGGCuCGGGCuGGCGu---GGc -3'
miRNA:   3'- -CGCUG----UCCCG-GUCCGuCCGCuaauCC- -5'
14596 5' -57 NC_003521.1 + 36774 0.72 0.686348
Target:  5'- cGCG-CGuGGCCuGGCGGGCGuggAGGa -3'
miRNA:   3'- -CGCuGUcCCGGuCCGUCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 37394 0.68 0.88952
Target:  5'- gGCGGCGGGGgcgcCCGGGCcuuGuGCGAcggccUGGGa -3'
miRNA:   3'- -CGCUGUCCC----GGUCCGu--C-CGCUa----AUCC- -5'
14596 5' -57 NC_003521.1 + 38225 0.71 0.743666
Target:  5'- gGCG-CAGGGCgGccucGGCGGGCGGggcGGa -3'
miRNA:   3'- -CGCuGUCCCGgU----CCGUCCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 39033 0.67 0.919386
Target:  5'- aGCGACGgcGGGUguGGCgccgAGGCGAa---- -3'
miRNA:   3'- -CGCUGU--CCCGguCCG----UCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 44975 0.66 0.947992
Target:  5'- gGCGACAGcGCUgacgccagAGGCGGG-GAgggAGGa -3'
miRNA:   3'- -CGCUGUCcCGG--------UCCGUCCgCUaa-UCC- -5'
14596 5' -57 NC_003521.1 + 46407 0.66 0.939335
Target:  5'- gGCG-CGcGGGCCAGGaagcGGCGAc-GGGc -3'
miRNA:   3'- -CGCuGU-CCCGGUCCgu--CCGCUaaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.