miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 113358 0.7 0.771217
Target:  5'- gGgGAC-GGGCCGGG--GGCGAggAGGa -3'
miRNA:   3'- -CgCUGuCCCGGUCCguCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 120936 0.72 0.647196
Target:  5'- cGCGGCGGcGGCUccggcgagGGGCAGGgGGcgGGGc -3'
miRNA:   3'- -CGCUGUC-CCGG--------UCCGUCCgCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 224011 0.72 0.666824
Target:  5'- uGCGGCAGcGG-CGGGCccGGCGGUcGGGg -3'
miRNA:   3'- -CGCUGUC-CCgGUCCGu-CCGCUAaUCC- -5'
14596 5' -57 NC_003521.1 + 36774 0.72 0.686348
Target:  5'- cGCG-CGuGGCCuGGCGGGCGuggAGGa -3'
miRNA:   3'- -CGCuGUcCCGGuCCGUCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 238453 0.71 0.743665
Target:  5'- gGCG-CAGGGCgGccucGGCGGGCGGggcGGa -3'
miRNA:   3'- -CGCuGUCCCGgU----CCGUCCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 109439 0.71 0.750175
Target:  5'- -aGACAGGGCCguGGGCacggucucggguauGGGCGcgUcuGGGa -3'
miRNA:   3'- cgCUGUCCCGG--UCCG--------------UCCGCuaA--UCC- -5'
14596 5' -57 NC_003521.1 + 129126 0.71 0.75295
Target:  5'- cGCG-CAGGuacGUCAGGCAGGCGGc---- -3'
miRNA:   3'- -CGCuGUCC---CGGUCCGUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 180855 0.71 0.75295
Target:  5'- aGCcGC-GGGUCAGGCGGGCGuuguGGc -3'
miRNA:   3'- -CGcUGuCCCGGUCCGUCCGCuaauCC- -5'
14596 5' -57 NC_003521.1 + 110439 0.7 0.76305
Target:  5'- aGCGGCgguuguuggugcccAGGGggaggaauuccugcuCCAGGCAGGgGAUcAGGg -3'
miRNA:   3'- -CGCUG--------------UCCC---------------GGUCCGUCCgCUAaUCC- -5'
14596 5' -57 NC_003521.1 + 109377 0.73 0.627525
Target:  5'- aGCGGCAGgcaGGCCAGGUcgcggaAGGCGcucAGGg -3'
miRNA:   3'- -CGCUGUC---CCGGUCCG------UCCGCuaaUCC- -5'
14596 5' -57 NC_003521.1 + 52234 0.73 0.61769
Target:  5'- gGCGGC-GGGCUAcaguugggcagcGGCAGGCGGUUGu- -3'
miRNA:   3'- -CGCUGuCCCGGU------------CCGUCCGCUAAUcc -5'
14596 5' -57 NC_003521.1 + 151312 0.73 0.607866
Target:  5'- cGCGcaaGGcGGCCAGGCGGGUGGcguccgAGGg -3'
miRNA:   3'- -CGCug-UC-CCGGUCCGUCCGCUaa----UCC- -5'
14596 5' -57 NC_003521.1 + 70232 0.86 0.130813
Target:  5'- cGCGcaGCAGGGCUAGGCAgGGCGAgcuggUGGGg -3'
miRNA:   3'- -CGC--UGUCCCGGUCCGU-CCGCUa----AUCC- -5'
14596 5' -57 NC_003521.1 + 168428 0.81 0.260096
Target:  5'- gGCGGCAGGGCCGcggcGGCGGGCGugaagagcgugaUGGGg -3'
miRNA:   3'- -CGCUGUCCCGGU----CCGUCCGCua----------AUCC- -5'
14596 5' -57 NC_003521.1 + 86188 0.75 0.530387
Target:  5'- aGCGACucgcGGGCCAcGGUggAGGCGA--AGGg -3'
miRNA:   3'- -CGCUGu---CCCGGU-CCG--UCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 205213 0.74 0.539909
Target:  5'- cCGucCAGGGCC-GGCAGGCgGAUcAGGg -3'
miRNA:   3'- cGCu-GUCCCGGuCCGUCCG-CUAaUCC- -5'
14596 5' -57 NC_003521.1 + 77725 0.74 0.548528
Target:  5'- gGCGACGGcGGCCucGGUGGGCGGcgucugguaguggUUGGGc -3'
miRNA:   3'- -CGCUGUC-CCGGu-CCGUCCGCU-------------AAUCC- -5'
14596 5' -57 NC_003521.1 + 30891 0.74 0.549489
Target:  5'- cCGAgAGGGCCGagcugaacugcGGCAGGCGAgagcgguccUGGGg -3'
miRNA:   3'- cGCUgUCCCGGU-----------CCGUCCGCUa--------AUCC- -5'
14596 5' -57 NC_003521.1 + 133211 0.74 0.559121
Target:  5'- cGCGGuCGGGGCgCGGGUucagGGGCGAUggcggucgAGGa -3'
miRNA:   3'- -CGCU-GUCCCG-GUCCG----UCCGCUAa-------UCC- -5'
14596 5' -57 NC_003521.1 + 103059 0.73 0.598058
Target:  5'- uGCaGACAGGGCgGGugcGCGGGCGA--GGGc -3'
miRNA:   3'- -CG-CUGUCCCGgUC---CGUCCGCUaaUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.