miRNA display CGI


Results 21 - 40 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 5' -57 NC_003521.1 + 47573 0.67 0.913848
Target:  5'- gGCGAgcGGGCCAcGguGGCGGUcGGa -3'
miRNA:   3'- -CGCUguCCCGGUcCguCCGCUAaUCc -5'
14596 5' -57 NC_003521.1 + 48936 0.68 0.854446
Target:  5'- aGCGGCGGGGagggagaagCGGuGCAGGUGG--AGGa -3'
miRNA:   3'- -CGCUGUCCCg--------GUC-CGUCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 49047 0.75 0.502209
Target:  5'- aCGGCAaGGUCGGGCAGGCGAcc-GGa -3'
miRNA:   3'- cGCUGUcCCGGUCCGUCCGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 50030 0.66 0.929802
Target:  5'- aGCGcaGCAGGGCCuuuuugaGGGCGucgUAGGc -3'
miRNA:   3'- -CGC--UGUCCCGGuccg---UCCGCua-AUCC- -5'
14596 5' -57 NC_003521.1 + 52234 0.73 0.61769
Target:  5'- gGCGGC-GGGCUAcaguugggcagcGGCAGGCGGUUGu- -3'
miRNA:   3'- -CGCUGuCCCGGU------------CCGUCCGCUAAUcc -5'
14596 5' -57 NC_003521.1 + 56248 0.67 0.919386
Target:  5'- aUGuCGGGGCUgAGGCAGGCcggcaggcagaGGUUGGa -3'
miRNA:   3'- cGCuGUCCCGG-UCCGUCCG-----------CUAAUCc -5'
14596 5' -57 NC_003521.1 + 65486 0.69 0.814741
Target:  5'- -gGACgAGGuGaCCAGGCAGGCGAc---- -3'
miRNA:   3'- cgCUG-UCC-C-GGUCCGUCCGCUaaucc -5'
14596 5' -57 NC_003521.1 + 67265 0.66 0.939334
Target:  5'- cGUGGCAGGa--GGGCGGGCaGggAGGa -3'
miRNA:   3'- -CGCUGUCCcggUCCGUCCGcUaaUCC- -5'
14596 5' -57 NC_003521.1 + 67835 0.66 0.934678
Target:  5'- aGCGGCAGGaacGCgAgaagaacgacacGGCA-GCGGUUGGGg -3'
miRNA:   3'- -CGCUGUCC---CGgU------------CCGUcCGCUAAUCC- -5'
14596 5' -57 NC_003521.1 + 69710 0.7 0.783736
Target:  5'- gGUGGCGGcGGCCcugagguacgcgguaAcGGCGGGCGGggAGGc -3'
miRNA:   3'- -CGCUGUC-CCGG---------------U-CCGUCCGCUaaUCC- -5'
14596 5' -57 NC_003521.1 + 69752 0.68 0.882908
Target:  5'- nGCGGCGGuGGCaCAagugcaugaucGGaCGGGCGAgccgGGGg -3'
miRNA:   3'- -CGCUGUC-CCG-GU-----------CC-GUCCGCUaa--UCC- -5'
14596 5' -57 NC_003521.1 + 70232 0.86 0.130813
Target:  5'- cGCGcaGCAGGGCUAGGCAgGGCGAgcuggUGGGg -3'
miRNA:   3'- -CGC--UGUCCCGGUCCGU-CCGCUa----AUCC- -5'
14596 5' -57 NC_003521.1 + 70363 0.7 0.805462
Target:  5'- uCGGCGGGGUagagccgCAGGC-GGCGGUagAGGu -3'
miRNA:   3'- cGCUGUCCCG-------GUCCGuCCGCUAa-UCC- -5'
14596 5' -57 NC_003521.1 + 72841 0.67 0.90809
Target:  5'- cGCGAC--GGCCugGGGC-GGCGAcggUAGGc -3'
miRNA:   3'- -CGCUGucCCGG--UCCGuCCGCUa--AUCC- -5'
14596 5' -57 NC_003521.1 + 74910 0.68 0.882235
Target:  5'- gGCGGCGGuggagucGGCCcGGCAGcGCGGgguGGu -3'
miRNA:   3'- -CGCUGUC-------CCGGuCCGUC-CGCUaauCC- -5'
14596 5' -57 NC_003521.1 + 76223 0.71 0.715302
Target:  5'- aGUGGCGGcGGCCGguGGCGuGGCGGUUAc- -3'
miRNA:   3'- -CGCUGUC-CCGGU--CCGU-CCGCUAAUcc -5'
14596 5' -57 NC_003521.1 + 77716 0.67 0.902115
Target:  5'- gGCGGCGGuGGUCGuGGCGcuGGCGcccgAGGa -3'
miRNA:   3'- -CGCUGUC-CCGGU-CCGU--CCGCuaa-UCC- -5'
14596 5' -57 NC_003521.1 + 77725 0.74 0.548528
Target:  5'- gGCGACGGcGGCCucGGUGGGCGGcgucugguaguggUUGGGc -3'
miRNA:   3'- -CGCUGUC-CCGGu-CCGUCCGCU-------------AAUCC- -5'
14596 5' -57 NC_003521.1 + 84427 0.66 0.934201
Target:  5'- aGCGGCAGGGUgGcgaagcggcccucGGuCAGGCGcugcAGGa -3'
miRNA:   3'- -CGCUGUCCCGgU-------------CC-GUCCGCuaa-UCC- -5'
14596 5' -57 NC_003521.1 + 84618 0.66 0.947579
Target:  5'- gGUGACGGccaggucguccucGGCCAuGCAGGgGAUgucgUGGGu -3'
miRNA:   3'- -CGCUGUC-------------CCGGUcCGUCCgCUA----AUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.