miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 3' -57.6 NC_003521.1 + 53278 0.68 0.875304
Target:  5'- gACCUgaaGGAGGACGGgccgcucauuaucggUCGUCCCGgAGGa -3'
miRNA:   3'- gUGGA---CCUUCUGCU---------------GGCGGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 59594 0.67 0.904668
Target:  5'- gCGCCaaGAAGgacgguagugGCGGCgGCCCCGgcGGc -3'
miRNA:   3'- -GUGGacCUUC----------UGCUGgCGGGGCauCC- -5'
14597 3' -57.6 NC_003521.1 + 59670 0.66 0.935356
Target:  5'- gCGCCUGGAggagcucagacgccaGGugGagcccuaccucaacuGCCGCgCCGUGGc -3'
miRNA:   3'- -GUGGACCU---------------UCugC---------------UGGCGgGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 60156 0.69 0.827705
Target:  5'- aACCUGGuGGAUGucgUCGCCCCGgUAGc -3'
miRNA:   3'- gUGGACCuUCUGCu--GGCGGGGC-AUCc -5'
14597 3' -57.6 NC_003521.1 + 60532 0.66 0.940805
Target:  5'- gCAUCUGGGAGACGguGCUGCUCaaCGUGc- -3'
miRNA:   3'- -GUGGACCUUCUGC--UGGCGGG--GCAUcc -5'
14597 3' -57.6 NC_003521.1 + 61290 0.68 0.879376
Target:  5'- aGCCgagcGGGACGACuuugCGCgCCCGUGGGa -3'
miRNA:   3'- gUGGacc-UUCUGCUG----GCG-GGGCAUCC- -5'
14597 3' -57.6 NC_003521.1 + 63060 0.69 0.819636
Target:  5'- -cCCUGGc-GACGACCGCgacCCCGUAc- -3'
miRNA:   3'- guGGACCuuCUGCUGGCG---GGGCAUcc -5'
14597 3' -57.6 NC_003521.1 + 65367 0.67 0.916063
Target:  5'- -uCCgGGGAGACGGCgCGCCgCCGa--- -3'
miRNA:   3'- guGGaCCUUCUGCUG-GCGG-GGCaucc -5'
14597 3' -57.6 NC_003521.1 + 66698 0.68 0.879376
Target:  5'- -uCCUGGGcuGCGACC-CCCUG-AGGg -3'
miRNA:   3'- guGGACCUucUGCUGGcGGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 68249 0.71 0.722376
Target:  5'- uCACCUGGcGGuGCGACCGCCgaCCccGGGa -3'
miRNA:   3'- -GUGGACCuUC-UGCUGGCGG--GGcaUCC- -5'
14597 3' -57.6 NC_003521.1 + 69700 0.68 0.886005
Target:  5'- -uCCUGGugucgguGGCGGCgGCCCUG-AGGu -3'
miRNA:   3'- guGGACCuu-----CUGCUGgCGGGGCaUCC- -5'
14597 3' -57.6 NC_003521.1 + 70103 0.66 0.931552
Target:  5'- gCACCUGGccGGCGuGCCGCCgaagggCCGcuaucAGGg -3'
miRNA:   3'- -GUGGACCuuCUGC-UGGCGG------GGCa----UCC- -5'
14597 3' -57.6 NC_003521.1 + 72133 0.69 0.819636
Target:  5'- uCACCUGaccGAGGACGGCCuGCCaCC--AGGg -3'
miRNA:   3'- -GUGGAC---CUUCUGCUGG-CGG-GGcaUCC- -5'
14597 3' -57.6 NC_003521.1 + 72667 0.73 0.60696
Target:  5'- gGCCUGGgcGGCGccccuauuCCGCCCCGUc-- -3'
miRNA:   3'- gUGGACCuuCUGCu-------GGCGGGGCAucc -5'
14597 3' -57.6 NC_003521.1 + 76760 0.72 0.69395
Target:  5'- gACCUccGAGGCGACCGUCgCCGUGGc -3'
miRNA:   3'- gUGGAccUUCUGCUGGCGG-GGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 78200 0.66 0.936285
Target:  5'- gACUgUGGAGGAagaaaCGGCCGCCCUGa--- -3'
miRNA:   3'- gUGG-ACCUUCU-----GCUGGCGGGGCaucc -5'
14597 3' -57.6 NC_003521.1 + 84862 0.67 0.916063
Target:  5'- gCACCguacGGuAGAaGGCCGCCCgGUccGGGu -3'
miRNA:   3'- -GUGGa---CCuUCUgCUGGCGGGgCA--UCC- -5'
14597 3' -57.6 NC_003521.1 + 86896 0.72 0.665106
Target:  5'- -uCCUGGAcgaaguGGugGAgaaCGCCCCGUGGa -3'
miRNA:   3'- guGGACCU------UCugCUg--GCGGGGCAUCc -5'
14597 3' -57.6 NC_003521.1 + 87778 0.68 0.850929
Target:  5'- gGCCUGGG----GGCCGCCUCGUcGGu -3'
miRNA:   3'- gUGGACCUucugCUGGCGGGGCAuCC- -5'
14597 3' -57.6 NC_003521.1 + 88442 0.67 0.904668
Target:  5'- -uCCaGGGAGACGucguCCGCCUCGgcgucGGGc -3'
miRNA:   3'- guGGaCCUUCUGCu---GGCGGGGCa----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.